Evidence map›Paper›PMID 38971852›Full record

ArticleScientific data2024

Chromosome-level genome assembly of an oligophagous leaf beetle Ophraella communa (Coleoptera: Chrysomelidae).

Yi-Ting Wang, Yan Zhang, Chao Ma, Wei-Hua Ma, Li-Jun Cao, Jin-Cui Chen, Wei Song, Jing-Fang Yang, Xu-Yuan Gao, Hong-Song Chen and 4 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yi-Ting Wang *State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Yan Zhang *State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Chao MaState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Wei-Hua MaHubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Li-Jun CaoInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.ORCID 0000-0002-4595-0136
Jin-Cui ChenInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Wei SongInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Jing-Fang YangState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Xu-Yuan GaoNational Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
Hong-Song ChenNational Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya, 572019, China.
Zhen-Ya TianState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Nicolas DesneuxFrench National Institute for Agriculture, Food, and Environment, Nice, 06000, France.
Shu-Jun WeiInstitute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. shujun268@163.com.ORCID 0000-0001-7398-0968
Zhong-Shi ZhouState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. zhouzhongshi@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The leaf beetle Ophraella communa LeSage (Coleoptera: Chrysomelidae) is an effective biological control agent of the common ragweed. Here, we assembled a chromosome-level genome of the O. communa by combining Illumina, Nanopore, and Hi-C sequencing technologies. The genome size of the final genome assembly is 733.1 Mb, encompassing 17 chromosomes, with an improved contig N50 of 7.05 Mb compared to the original version. Genome annotation reveals 25,873 protein-coding genes, with functional annotations available for 22,084 genes (85.35%). Non-coding sequence annotation identified 204 rRNAs, 626 tRNAs, and 1791 small RNAs. Repetitive elements occupy 414.41 Mb, constituting 57.76% of the genome. This high-quality genome is fundamental for advancing biological control strategies employing O. communa.

Indexed as

ColeopteraGenome, InsectAnimalsChromosomes, InsectMolecular Sequence Annotation

Identifiers

PMID38971852
PMCPMC11227576

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.