Evidence map›Paper›PMID 38969708›Full record

ArticleNature communications2024

tracerDB: a crowdsourced fluorescent tracer database for target engagement analysis.

Johannes Dopfer, James D Vasta, Susanne Müller, Stefan Knapp, Matthew B Robers, Martin P Schwalm

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  11. Cellular Context Influences Kinase Inhibitor Selectivity.Journal of medicinal chemistry · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Johannes DopferInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany.ORCID 0009-0008-6356-1864
James D VastaPromega Corporation, Madison, WI, USA.
Susanne MüllerInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany.ORCID 0000-0003-2402-4157
Stefan KnappInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany.
Matthew B RobersPromega Corporation, Madison, WI, USA.ORCID 0000-0001-8505-5227
Martin P SchwalmInstitute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany. schwalm@pharmchem.uni-frankfurt.de.ORCID 0000-0002-1252-1829

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 424228829
6 · The paper itself

Abstract

Investigating ligand-protein complexes is essential in the areas of chemical biology and drug discovery. However, detailed information on key reagents such as fluorescent tracers and associated data for the development of widely used bioluminescence resonance energy transfer (BRET) assays including NanoBRET, time-resolved Förster resonance energy transfer (TR-FRET) and fluorescence polarization (FP) assays are not easily accessible to the research community. We created tracerDB, a curated database of validated tracers. This resource provides an open access knowledge base and a unified system for tracer and assay validation. The database is freely available at https://www.tracerdb.org/ .

Indexed as

Fluorescence Resonance Energy TransferBioluminescence Resonance Energy Transfer TechniquesCrowdsourcingDatabases, FactualDrug DiscoveryFluorescence PolarizationFluorescent DyesHumansLigandsFluorescent DyesLigands

Identifiers

PMID38969708
PMCPMC11226670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.