Evidence map›Paper›PMID 38968123›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

A tandem activity-based sensing and labeling strategy reveals antioxidant response element regulation of labile iron pools.

Aidan T Pezacki, Ryan L Gonciarz, Toshitaka Okamura, Carson D Matier, Laura Torrente, Ke Cheng, Sophia G Miller, Martina Ralle, Nathan P Ward, Gina M DeNicola and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Journal of clinical biochemistry and nutrition · 2026
    Article
  4. Article
  5. Review
  6. A histochemical approach to activity-based copper sensing reveals cuproplasia-dependent vulnerabilities in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. The Labile Side of Iron in Health and Disease: A Narrative Review.Advances in experimental medicine and biology · 2025
    Review
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aidan T Pezacki *Department of Chemistry, University of California, Berkeley, CA 94720.ORCID 0000-0002-7321-462X
Ryan L Gonciarz *Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.
Toshitaka OkamuraDepartment of Chemistry, University of California, Berkeley, CA 94720.ORCID 0009-0003-0058-4165
Carson D MatierDepartment of Chemistry, University of California, Berkeley, CA 94720.ORCID 0000-0002-1618-7944
Laura TorrenteDepartment of Metabolism and Physiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612.ORCID 0000-0003-0343-0287
Ke ChengDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0001-5057-3120
Sophia G MillerDepartment of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR 97239.ORCID 0000-0002-4141-2357
Martina RalleDepartment of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR 97239.ORCID 0000-0001-7786-0242
Nathan P WardDepartment of Metabolism and Physiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612.
Gina M DeNicolaDepartment of Metabolism and Physiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612.ORCID 0000-0001-6611-6696
Adam R RensloDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0002-1240-2846
Christopher J ChangDepartment of Chemistry, University of California, Berkeley, CA 94720.ORCID 0000-0001-5732-9497

Funding

Molecular Imaging Probes To Study Redox BiologyR01GM079465 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2006 to 2026
$7.8M
Chemical Methods for Ferrous Iron Dependent Drug DeliveryR01AI105106 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RENSLO, ADAM R · 2013 to 2022
$4.6M
Understanding Efficacy and Fe(II)-Promoted Activation of 1,2,4-Trioxolanes in CancerR01CA260860 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COLLISSON, ERIC, RENSLO, ADAM R · 2021 to 2025
$3.1M
Chemical Probes to Study Methionine Redox BiologyR01GM139245 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Christopher J. Chang · 2020 to 2026
$2.9M
Inductively Coupled Plasma Mass Spectrometer for High Sensitivity Elemental AnalysisS10OD028492 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI RALLE, MARTINA · 2021 to 2021
$336k
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
Florida Department of Health (DOH) 9BC07HHS | National Institutes of Health (NIH) AI105106HHS | National Institutes of Health (NIH) GM139245HHS | National Institutes of Health (NIH) GM79465HHS | National Institutes of Health (NIH) S10OD024998HHS | National Institutes of Health (NIH) S10OD028492NCI NIH HHS R01 CA260860NIAID NIH HHS R01 AI105106NIGMS NIH HHS R01 GM079465NIGMS NIH HHS R01 GM139245NIH HHS S10 OD024998NIH HHS S10 OD028492
6 · The paper itself

Abstract

Iron is an essential element for life owing to its ability to participate in a diverse array of oxidation-reduction reactions. However, misregulation of iron-dependent redox cycling can also produce oxidative stress, contributing to cell growth, proliferation, and death pathways underlying aging, cancer, neurodegeneration, and metabolic diseases. Fluorescent probes that selectively monitor loosely bound Fe(II) ions, termed the labile iron pool, are potentially powerful tools for studies of this metal nutrient; however, the dynamic spatiotemporal nature and potent fluorescence quenching capacity of these bioavailable metal stores pose challenges for their detection. Here, we report a tandem activity-based sensing and labeling strategy that enables imaging of labile iron pools in live cells through enhancement in cellular retention. Iron green-1 fluoromethyl (IG1-FM) reacts selectively with Fe(II) using an endoperoxide trigger to release a quinone methide dye for subsequent attachment to proximal biological nucleophiles, providing a permanent fluorescent stain at sites of elevated labile iron. IG1-FM imaging reveals that degradation of the major iron storage protein ferritin through ferritinophagy expands the labile iron pool, while activation of nuclear factor-erythroid 2-related factor 2 (NRF2) antioxidant response elements (AREs) depletes it. We further show that lung cancer cells with heightened NRF2 activation, and thus lower basal labile iron, have reduced viability when treated with an iron chelator. By connecting labile iron pools and NRF2-ARE activity to a druggable metal-dependent vulnerability in cancer, this work provides a starting point for broader investigations into the roles of transition metal and antioxidant signaling pathways in health and disease.

Indexed as

Antioxidant Response ElementsIronAntioxidantsCell Line, TumorFerritinsFluorescent DyesHumansNF-E2-Related Factor 2Oxidation-ReductionOxidative StressAntioxidantsFerritinsFluorescent DyesIronNF-E2-Related Factor 2activity-based sensingantioxidant regulationcancer metabolismfluorescent iron probetransition metal signaling

Identifiers

PMID38968123
PMCPMC11252945

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.