Evidence map›Paper›PMID 38968116›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Ubiquitin-induced RNF168 condensation promotes DNA double-strand break repair.

Li-Li Feng, Shu-Ying Bie, Zhi-Heng Deng, Shao-Mei Bai, Jie Shi, Cao-Litao Qin, Huan-Lei Liu, Jia-Xu Li, Wan-Ying Chen, Jin-Ying Zhou and 9 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Li-Li Feng *Department of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.ORCID 0000-0002-2692-2754
Shu-Ying Bie *Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.ORCID 0009-0007-6920-107X
Zhi-Heng Deng *Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China.
Shao-Mei Bai *Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.ORCID 0000-0003-3213-5519
Jie ShiGuangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.
Cao-Litao QinGuangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.
Huan-Lei LiuDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.
Jia-Xu LiDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.
Wan-Ying ChenAcademy of Medical Sciences, Zhengzhou University, Zhengzhou, Henan 450052, China.ORCID 0009-0008-2984-203X
Jin-Ying ZhouDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.
Chun-Mei JiaoDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.
Yi MaGuangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.ORCID 0009-0009-0544-0463
Meng-Bo QiuAcademy of Medical Sciences, Zhengzhou University, Zhengzhou, Henan 450052, China.ORCID 0009-0004-5324-8066
Hua-Song AiTsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China.ORCID 0000-0002-3378-5874
Jian ZhengGuangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong 510655, China.
Mien-Chie HungGraduate Institute of Biomedical Sciences, Institute of Biochemistry and Molecular Biology, Research Center for Cancer Biology, Cancer Biology and Precision Therapeutics Center, and Center for Molecular Medicine, China Medical University, Taichung 406, Taiwan (Republic of China).ORCID 0000-0003-4317-4740
Yun-Long WangDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.ORCID 0000-0002-5925-6938
Xiang-Bo WanDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.
Xin-Juan FanDepartment of Pathology, Henan Provincial Key Laboratory of Radiation Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan 450052, China.

Funding

Beijing Bethune Charitable Foundation No.flzh202102GDSTC | Science Fund for Distinguished Young Scholars of Guangdong Province () No.2021B1515020022Guangdong Science and Technology Project No.2022A1515012363MOE | Fundamental Research Funds for the Central Universities (Fundamental Research Fund for the Central Universities) No.22qntd3602MOST | National Key Research and Development Program of China (NKPs) No.2022YFA1105300MOST | National Key Research and Development Program of China (NKPs) No.2022YFC2503700MOST | National Natural Science Foundation of China (NSFC) No.82103770MOST | National Natural Science Foundation of China (NSFC) No.82171163MOST | National Natural Science Foundation of China (NSFC) No.82302307MOST | National Natural Science Foundation of China (NSFC) No.82373513MOST | NSFC | National Science Fund for Distinguished Young Scholars (National Science Foundation for Distinguished Young Scholars) No.82225040National Postdoctoral Program for Innovative Talents of China No.BX20220359National Science Fund for Excellent Young Scholars No.82122057
6 · The paper itself

Abstract

Rapid accumulation of repair factors at DNA double-strand breaks (DSBs) is essential for DSB repair. Several factors involved in DSB repair have been found undergoing liquid-liquid phase separation (LLPS) at DSB sites to facilitate DNA repair. RNF168, a RING-type E3 ubiquitin ligase, catalyzes H2A.X ubiquitination for recruiting DNA repair factors. Yet, whether RNF168 undergoes LLPS at DSB sites remains unclear. Here, we identified K63-linked polyubiquitin-triggered RNF168 condensation which further promoted RNF168-mediated DSB repair. RNF168 formed liquid-like condensates upon irradiation in the nucleus while purified RNF168 protein also condensed in vitro. An intrinsically disordered region containing amino acids 460-550 was identified as the essential domain for RNF168 condensation. Interestingly, LLPS of RNF168 was significantly enhanced by K63-linked polyubiquitin chains, and LLPS largely enhanced the RNF168-mediated H2A.X ubiquitination, suggesting a positive feedback loop to facilitate RNF168 rapid accumulation and its catalytic activity. Functionally, LLPS deficiency of RNF168 resulted in delayed recruitment of 53BP1 and BRCA1 and subsequent impairment in DSB repair. Taken together, our finding demonstrates the pivotal effect of LLPS in RNF168-mediated DSB repair.

Indexed as

DNA RepairUbiquitin-Protein LigasesDNA Breaks, Double-StrandedHistonesHumansPolyubiquitinTumor Suppressor p53-Binding Protein 1UbiquitinUbiquitinationHistonesPolyubiquitinRNF168 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1UbiquitinUbiquitin-Protein LigasesDNA double-strand break repairintrinsically disordered regionliquid–liquid phase separationpolyubiquitinRNF168

Identifiers

PMID38968116
PMCPMC11252754

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.