Evidence map›Paper›PMID 38966585›Full record

ArticleOncology letters2024

Proteomic insights into the regulatory function of ARID1A in colon cancer cells.

Siripat Aluksanasuwan, Keerakarn Somsuan, Sasithorn Wanna-Udom, Sittiruk Roytrakul, Atthapan Morchang, Artitaya Rongjumnong, Natthiya Sakulsak

Abstract read
In one paragraph

Article in Oncology letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Molecular medicine reports · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Siripat AluksanasuwanSchool of Medicine, Mae Fah Luang University, Muang, Chiang Rai 57100, Thailand.
Keerakarn SomsuanSchool of Medicine, Mae Fah Luang University, Muang, Chiang Rai 57100, Thailand.
Sasithorn Wanna-UdomDepartment of Anatomy, Faculty of Medical Science, Naresuan University, Muang, Phitsanulok 65000, Thailand.
Sittiruk RoytrakulFunctional Proteomics Technology Laboratory, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Klongluang, Pathum Thani 12120, Thailand.
Atthapan MorchangSchool of Medicine, Mae Fah Luang University, Muang, Chiang Rai 57100, Thailand.
Artitaya RongjumnongSchool of Medicine, Mae Fah Luang University, Muang, Chiang Rai 57100, Thailand.
Natthiya SakulsakDepartment of Anatomy, Faculty of Medical Science, Naresuan University, Muang, Phitsanulok 65000, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The AT-rich interacting domain-containing protein 1A (ARID1A) is a tumor suppressor gene that has been implicated in several cancers, including colorectal cancer (CRC). The present study used a proteomic approach to elucidate the molecular mechanisms of ARID1A in CRC carcinogenesis. Stable ARID1A-overexpressing SW48 colon cancer cells were established using lentivirus transduction and the successful overexpression of ARID1A was confirmed by western blotting. Label-free quantitative proteomic analysis using liquid chromatography-tandem mass spectrometry identified 705 differentially altered proteins in the ARID1A-overexpressing cells, with 310 proteins significantly increased and 395 significantly decreased compared with empty vector control cells. Gene Ontology enrichment analysis highlighted the involvement of the altered proteins mainly in the Wnt signaling pathway. Western blotting supported these findings, as a decreased protein expression of Wnt target genes, including c-Myc, transcription factor T cell factor-1/7 and cyclin D1, were observed in ARID1A-overexpressing cells. Among the altered proteins involved in the Wnt signaling pathway, the interaction network analysis revealed that ARID1A exhibited a direct interaction with E3 ubiquitin-protein ligase zinc and ring finger 3 (ZNRF3), a negative regulator of the Wnt signaling pathway. Further analyses using the The Cancer Genome Atlas colon adenocarcinoma public dataset revealed that ZNRF3 expression significantly impacted the overall survival of patients with CRC and was positively correlated with ARID1A expression. Finally, an increased level of ZNRF3 in ARID1A-overexpressing cells was confirmed by western blotting. In conclusion, the findings of the present study suggest that ARID1A negatively regulates the Wnt signaling pathway through ZNRF3, which may contribute to CRC carcinogenesis.

Indexed as

AT-rich interacting domain-containing protein 1Acolorectal cancerproteomicsWnt signaling pathwayzinc and ring finger 3

Identifiers

PMID38966585
PMCPMC11223007

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.