Evidence map›Paper›PMID 38966234›Full record

ArticleJHEP reports : innovation in hepatology2024

Interleukin-7-based identification of liver lymphatic endothelial cells reveals their unique structural features.

Yilin Yang, Jain Jeong, Tingting Su, Sanchuan Lai, Pengpeng Zhang, Rolando Garcia-Milian, Morven Graham, Xinran Liu, Matthew J McConnell, Teruo Utsumi and 2 more

Abstract read
In one paragraph

Article in JHEP reports : innovation in hepatology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yilin YangDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Jain JeongDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Tingting SuDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Sanchuan LaiDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Pengpeng ZhangDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Rolando Garcia-MilianBioinformatics Support Hub, Cushing/Whitney Medical Library, Yale University School of Medicine, New Haven, CT 06510, USA.
Morven GrahamCenter for Cellular and Molecular Imaging, Yale University School of Medicine, New Haven, CT, USA.
Xinran LiuCenter for Cellular and Molecular Imaging, Yale University School of Medicine, New Haven, CT, USA.
Matthew J McConnellDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Teruo UtsumiDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.
Joao PereiraDepartment of Immunobiology and Yale Stem Cell Center, Yale University School of Medicine, New Haven, CT, USA.
Yasuko IwakiriDepartment of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT, USA.

Funding

Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
Hemodynamics and hepatic remodelingR01DK117597 · NIDDK · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2018 to 2021
$1.5M
Hepatic lymphatics in alcohol-associated liver diseaseR21AA031400 · NIAAA · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2023 to 2024
$456k
Alcohol metabolism in liver sinusoidal endothelial cellsR21AA023599 · NIAAA · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2015 to 2016
$437k
Lymphatics in the liverR56DK121511 · NIDDK · YALE UNIVERSITY · PI IWAKIRI, YASUKO · 2019 to 2019
$430k
NIAAA NIH HHS R21 AA023599NIAAA NIH HHS R21 AA031400NIDDK NIH HHS P30 DK034989NIDDK NIH HHS R01 DK117597NIDDK NIH HHS R56 DK121511
6 · The paper itself

Abstract

Background & Aims: The lymphatic system plays crucial roles in maintaining fluid balance and immune regulation. Studying the liver lymphatics has been considered challenging, as common lymphatic endothelial cell (LyEC) markers are expressed by other liver cells. Additionally, isolation of sufficient numbers of LyECs has been challenging because of their extremely low abundance (<0.01% of entire liver cell population) in a normal liver. Methods: Potential LyEC markers was identified using our published single-cell RNA sequencing (scRNA-seq) dataset (GSE147581) in mouse livers. Interleukin-7 (IL7) promoter-driven green fluorescent protein knock-in heterozygous mice were used for the validation of IL7 expression in LyECs in the liver, for the development of liver LyEC isolation protocol, and generating liver ischemia/reperfusion (I/R) injury. Scanning electron microscopy was used for the structural analysis of LyECs. Changes in LyEC phenotypes in livers of mice with I/R were determined by RNA-seq analysis. Results: Through scRNA-seq analysis, we have identified IL7 as an exclusive marker for liver LyECs, with no overlap with other liver cell types. Based on IL7 expression in liver LyECs, we have established an LyEC isolation method and observed distinct cell surface structures of LyECs with fenestrae and cellular pores (ranging from 100 to 400 nm in diameter). Furthermore, we identified LyEC genes that undergo alterations during I/R liver injuries. Conclusions: This study not only identified IL7 as an exclusively expressed gene in liver LyECs, but also enhanced our understanding of LyEC structures and demonstrated transcriptomic changes in injured livers. Impact and implications: Understanding the lymphatic system in the liver is challenging because of the absence of specific markers for liver LyEC. This study has identified IL7 as a reliable marker for LyECs, enabling the development of an effective method for their isolation, elucidating their unique cell surface structure, and identifying LyEC genes that undergo changes during liver damage. The development of IL7 antibodies for detecting it in human liver specimens will further advance our understanding of the liver lymphatic system in the future.

Indexed as

Hepatic lymphatic systemIL7Ischemia/reperfusionIsolation methodLiver injuryLiver lymphatic systemLiver sinusoidal endothelial cellLymphatic endothelial cellscRNA-seqTranscriptomics

Identifiers

PMID38966234
PMCPMC11222939

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.