Evidence map›Paper›PMID 38965817›Full record

ArticleThe plant genome2024

Genetic resources and genes/QTLs for gram pod borer (Helicoverpa armigera Hübner) resistance in chickpea from the Western Himalayas.

Sheikh Aafreen Rehman, Shaheen Gul, M Parthiban, Ishita Isha, M S Sai Reddy, Annapurna Chitikineni, Mahendar Thudi, R Varma Penmetsa, Rajeev Kumar Varshney, Reyazul Rouf Mir

Abstract read
In one paragraph

Article in The plant genome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sheikh Aafreen RehmanDivision of Entomology, Faculty of Agriculture (FoA), SKUAST-Kashmir, Kashmir, India.
Shaheen GulDivision of Entomology, Faculty of Agriculture (FoA), SKUAST-Kashmir, Kashmir, India.
M ParthibanDivision of Entomology, Faculty of Agriculture (FoA), SKUAST-Kashmir, Kashmir, India.
Ishita IshaDepartment of Agricultural Biotechnology and Molecular Biology, Dr. Rajendra Prasad Central Agricultural University (RPCAU), Pusa, India.
M S Sai ReddyDepartment of Entomology, Dr. Rajendra Prasad Central Agricultural University (RPCAU), Pusa, India.ORCID https://orcid.org/0000-0002-7616-5210
Annapurna ChitikineniCentre for Crop and Food Innovation, WA State Agricultural Biotechnology Centre, Murdoch University, Murdoch, Western Australia, Australia.
Mahendar ThudiDepartment of Agricultural Biotechnology and Molecular Biology, Dr. Rajendra Prasad Central Agricultural University (RPCAU), Pusa, India.ORCID https://orcid.org/0000-0003-2851-6837
R Varma PenmetsaDepartment of Plant Science, University of California, Davis (UC-Davis), Davis, California, USA.
Rajeev Kumar VarshneyCentre for Crop and Food Innovation, WA State Agricultural Biotechnology Centre, Murdoch University, Murdoch, Western Australia, Australia.ORCID https://orcid.org/0000-0002-4562-9131
Reyazul Rouf MirDivision of Genetics & Plant Breeding, Faculty of Agriculture (FoA), SKUAST-Kashmir, Kashmir, India.ORCID https://orcid.org/0000-0002-3196-211X

Funding

The International Atomic Energy Agency (IAEA) D22006
6 · The paper itself

Abstract

Helicoverpa armigera (also known as gram pod borer) is a serious threat to chickpea production in the world. A set of 173 chickpea genotypes were evaluated for H. armigera resistance, including mean larval population (MLP), percentage pod damage (PPD), and pest resistance (PR) for 2 consecutive years (year 2020 and 2021). The same core set was also genotyped with 50K Axiom CicerSNP Array. The trait data and 50,000 single nucleotide polymorphism genotypic data were used together to work out marker-trait associations (MTAs) using different genome-wide association studies models. For MLP, a total of 53 MTAs were identified, including 25 MTAs in year 2020 and 28 MTAs in year 2021. A set of three MTAs was found common in both environments. For PPD, two MTAs in year 2020 and five MTAs in year 2021 were identified. A set of two MTAs were common in both environments. Similarly, for PR, only two MTAs common in both environments were identified. Interestingly, a common MTA (Affx_123255526) on chromosome 2 (Ca2) was found to be associated with all the three component traits (MLP, PPD, and PR) of pod borer resistance in chickpea. Further, we report key genes that encode SCAMPs (that facilitates the secretion of defense-related molecules), quinone oxidoreductase (enables the production of reactive oxygen species that promotes diapause of gram pod borer), and NB-LRR proteins that have been implicated in plant defense against H. armigera. The resistant chickpea genotypes, MTAs, and key genes reported in the present study may prove useful in the future for developing pod borer-resistant chickpea varieties.

Indexed as

CicerMothsQuantitative Trait LociAnimalsGenes, PlantGenome-Wide Association StudyGenotypeHelicoverpa armigeraHimalayasLarvaPolymorphism, Single Nucleotide

Identifiers

PMID38965817
PMCPMC12807025

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.