Evidence map›Paper›PMID 38965412›Full record

ArticleNature ecology & evolution2024

Viperin immunity evolved across the tree of life through serial innovations on a conserved scaffold.

Helena Shomar, Héloïse Georjon, Yanlei Feng, Bismarck Olympio, Marie Guillaume, Florian Tesson, Jean Cury, Fabai Wu, Aude Bernheim

Abstract read
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In one paragraph

Article in Nature ecology & evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  3. The archaeal roots of eukaryotic life.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Helena Shomar *Institut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.ORCID http://orcid.org/0000-0002-1090-2871
Héloïse Georjon *Institut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.ORCID http://orcid.org/0000-0003-0694-542X
Yanlei FengSchool of Life Sciences, College of Science, Eastern Institute of Technology, Ningbo, China.ORCID http://orcid.org/0000-0002-3015-4970
Bismarck OlympioInstitut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.ORCID http://orcid.org/0009-0001-9906-085X
Marie GuillaumeInstitut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.ORCID http://orcid.org/0009-0001-8626-9929
Florian TessonInstitut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.ORCID http://orcid.org/0000-0003-4038-1154
Jean CuryInstitut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France.
Fabai WuSchool of Life Sciences, College of Science, Eastern Institute of Technology, Ningbo, China. fabaiwu@eitech.edu.cn.ORCID http://orcid.org/0000-0001-5812-5621
Aude BernheimInstitut Pasteur, Université Paris Cité, INSERM U1284, Molecular Diversity of Microbes Lab, Paris, France. aude.bernheim@pasteur.fr.ORCID http://orcid.org/0000-0003-0212-777X

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) PECAN 101040529EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 Marie Sklodowska-Curie Actions (H2020 Excellent Science - Marie Sklodowska-Curie Actions) 945298-ParisRegionFP
6 · The paper itself

Abstract

Evolutionary arms races between cells and viruses drive the rapid diversification of antiviral genes in diverse life forms. Recent discoveries have revealed the existence of immune genes that are shared between prokaryotes and eukaryotes and show molecular and mechanistic similarities in their response to viruses. However, the evolutionary dynamics underlying the conservation and adaptation of these antiviral genes remain mostly unexplored. Here, we show that viperins constitute a highly conserved family of immune genes across diverse prokaryotes and eukaryotes and identify mechanisms by which they diversified in eukaryotes. Our findings indicate that viperins are enriched in Asgard archaea and widely distributed in all major eukaryotic clades, suggesting their presence in the last eukaryotic common ancestor and their acquisition in eukaryotes from an archaeal lineage. We show that viperins maintain their immune function by producing antiviral nucleotide analogues and demonstrate that eukaryotic viperins diversified through serial innovations on the viperin gene, such as the emergence and selection of substrate specificity towards pyrimidine nucleotides, and through partnerships with genes maintained through genetic linkage, notably with nucleotide kinases. These findings unveil biochemical and genomic transitions underlying the adaptation of immune genes shared by prokaryotes and eukaryotes. Our study paves the way for further understanding of the conservation of immunity across domains of life.

Indexed as

Evolution, MolecularArchaeaEukaryotaPhylogeny

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.