Evidence map›Paper›PMID 38965224›Full record

ArticleNature communications2024

Structural and functional characterization of cyclic pyrimidine-regulated anti-phage system.

Mei-Hui Hou, Chao-Jung Chen, Chia-Shin Yang, Yu-Chuan Wang, Yeh Chen

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mei-Hui Hou *Department of Food Science and Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan.
Chao-Jung Chen *Graduate Institute of Integrated Medicine, China Medical University, Taichung, 40447, Taiwan.ORCID 0000-0003-3834-9243
Chia-Shin YangDepartment of Food Science and Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan.
Yu-Chuan WangDepartment of Food Science and Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan.ORCID 0000-0003-2726-9731
Yeh ChenDepartment of Food Science and Biotechnology, National Chung Hsing University, Taichung, 40227, Taiwan. chyeah6599@nchu.edu.tw.ORCID 0000-0002-7740-0446

Funding

Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) 111-2311-B-039-001-MY3
6 · The paper itself

Abstract

3',5'-cyclic uridine monophosphate (cUMP) and 3',5'-cyclic cytidine monophosphate (cCMP) have been established as bacterial second messengers in the phage defense system, named pyrimidine cyclase system for anti-phage resistance (Pycsar). This system consists of a pyrimidine cyclase and a cyclic pyrimidine receptor protein. However, the molecular mechanism underlying cyclic pyrimidine synthesis and recognition remains unclear. Herein, we determine the crystal structures of a uridylate cyclase and a cytidylate cyclase, revealing the conserved residues for cUMP and cCMP production, respectively. In addition, a distinct zinc-finger motif of the uridylate cyclase is identified to confer substantial resistance against phage infections. Furthermore, structural characterization of cUMP receptor protein PycTIR provides clear picture of specific cUMP recognition and identifies a conserved N-terminal extension that mediates PycTIR oligomerization and activation. Overall, our results contribute to the understanding of cyclic pyrimidine-mediated bacterial defense.

Indexed as

PyrimidinesAmino Acid SequenceBacterial ProteinsBacteriophagesCrystallography, X-RayEscherichia coliModels, MolecularUridine MonophosphateZinc FingersBacterial ProteinspyrimidinePyrimidinesUridine Monophosphate

Identifiers

PMID38965224
PMCPMC11224242

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.