Evidence map›Paper›PMID 38961872›Full record

ArticleBrain communications2024

Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study.

Marius Zeeb, Chloé Pasin, Matthias Cavassini, Mélanie Bieler-Aeschlimann, Paul Frischknecht, Katharina Kusejko, Jacques Fellay, François Blanquart, Karin J Metzner, Kathrin Neumann and 15 more

Abstract read
In one paragraph

Article in Brain communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Marius ZeebDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.ORCID https://orcid.org/0000-0001-6822-1473
Chloé PasinDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.ORCID https://orcid.org/0000-0001-8730-790X
Matthias CavassiniDivision of Infectious Diseases, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.ORCID https://orcid.org/0000-0003-0933-7833
Mélanie Bieler-AeschlimannDivision of Infectious Diseases, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.
Paul FrischknechtDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Katharina KusejkoDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.ORCID https://orcid.org/0000-0002-4638-1940
Jacques FellayDivision of Infectious Diseases, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.
François BlanquartCentre interdisciplinaire de recherche en biologie, Collége de France, 75231 Paris, France.
Karin J MetznerDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Kathrin NeumannDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Lisa JörimannDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Jasmin TschumiDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Enos BernasconiDivision of Infectious Diseases, Ente Ospedaliero Cantonale, 6500 Lugano, Switzerland.ORCID https://orcid.org/0000-0002-9724-8373
Michael HuberInstitute of Medical Virology, University of Zurich, 8057 Zurich, Switzerland.ORCID https://orcid.org/0000-0002-0384-0000
Helen KovariCenter for Infectious Diseases, Klinik im Park, 8027 Zurich, Switzerland.ORCID https://orcid.org/0000-0003-4896-4231
Karoline LeuzingerDivision Infection Diagnostics, Department Biomedicine, University of Basel, 4001 Basel  Switzerland.
Julia NotterDivision of Infectious Diseases and Hospital Epidemiology, Cantonal Hospital St. Gallen, 9007 St. Gallen, Switzerland.
Matthieu PerreauDivision of Immunology and Allergy, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland.
Andri RauchDepartment of Infectious Diseases, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland.ORCID https://orcid.org/0000-0001-5297-6062
Alban RametteInstitute for Infectious Diseases and Multidisciplinary Center for Infectious Diseases, University of Bern, 3012 Bern, Switzerland.
Marcel StöckleDivision of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, 4031 Basel, Switzerland.
Sabine YerlyLaboratory of Virology and Division of Infectious Diseases, Geneva University Hospital, University of Geneva, 1205 Geneva, Switzerland.
Huldrych F GünthardDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Roger D KouyosDepartment of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich, Switzerland.
Swiss HIV Cohort Study

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

People with HIV may report neurocognitive complaints, with or without associated neurocognitive impairment, varying between individuals and populations. While the HIV genome could play a major role, large systematic viral genome-wide screens to date are lacking. The Swiss HIV Cohort Study biannually enquires neurocognitive complaints. We quantified broad-sense heritability estimates using partial 'pol' sequences from the Swiss HIV Cohort Study resistance database and performed a viral near full-length genome-wide association study for the longitudinal area under the curve of neurocognitive complaints. We performed all analysis (i) restricted to HIV Subtype B and (ii) including all HIV subtypes. From 8547 people with HIV with neurocognitive complaints, we obtained 6966 partial 'pol' sequences and 2334 near full-length HIV sequences. Broad-sense heritability estimates for presence of memory loss complaints ranged between 1% and 17% (Subtype B restricted 1-22%) and increased with the stringency of the phylogenetic distance thresholds. The genome-wide association study revealed one amino acid (Env L641E), after adjusting for multiple testing, positively associated with memory loss complaints (

Indexed as

cohort studygenome-wide association studyHIVneurocognitive complaintsviral genome

Identifiers

PMID38961872
PMCPMC11220509

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.