Evidence map›Paper›PMID 38961623›Full record

ArticleBiophysical journal2024

Proton diffusion on the surface of mixed lipid membranes highlights the role of membrane composition.

Ambili Ramanthrikkovil Variyam, Mateusz Rzycki, Anna Yucknovsky, Alexei A Stuchebrukhov, Dominik Drabik, Nadav Amdursky

Abstract read
In one paragraph

Article in Biophysical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Glycolipids slow interfacial proton migration while preserving surface proton retention.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Quinones operate as proton-collecting antennas in energy-transducing membranes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. ATP synthase activity boosts membrane proton acceptance and lateral diffusion.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ambili Ramanthrikkovil VariyamSchulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa, Israel.
Mateusz RzyckiDepartment of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland.
Anna YucknovskySchulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa, Israel.
Alexei A StuchebrukhovDepartment of Chemistry, University of California at Davis, Davis, California.
Dominik DrabikDepartment of Biomedical Engineering, Wroclaw University of Science and Technology, Wroclaw, Poland.
Nadav AmdurskySchulich Faculty of Chemistry, Technion - Israel Institute of Technology, Haifa, Israel. Electronic address: amdursky@technion.ac.il.

Funding

Theoretical Study of Charge Transfer in Cytochrome C OxidaseR01GM054052 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI STUCHEBRUKHOV, ALEXEI A · 2002 to 2021
$3.3M
NIGMS NIH HHS R01 GM054052
6 · The paper itself

Abstract

Proton circuits within biological membranes, the foundation of natural bioenergetic systems, are significantly influenced by the lipid compositions of different biological membranes. In this study, we investigate the influence of mixed lipid membrane composition on the proton transfer (PT) properties on the surface of the membrane. We track the excited-state PT (ESPT) process from a tethered probe to the membrane with timescales and length scales of PT relevant to bioenergetic systems. Two processes can happen during ESPT: the initial PT from the probe to the membrane at short timescales, followed by diffusion of dissociated protons around the probe on the membrane, and the possible geminate recombination with the probe at longer timescales. Here, we use membranes composed of mixtures of phosphatidylcholine (PC) and phosphatidic acid (PA). We show that the changes in the ESPT properties are not monotonous with the concentration of the lipid mixture; at a low concentration of PA in PC, we find that the membrane is a poor proton acceptor. Molecular dynamics simulations indicate that the membrane is more structured at this specific lipid mixture, with the least number of defects. Accordingly, we suggest that the structure of the membrane is an important factor in facilitating PT. We further show that the composition of the membrane affects the geminate proton diffusion around the probe, whereas, on a timescale of tens of nanoseconds, the dissociated proton is mostly lateral restricted to the membrane plane in PA membranes, while in PC, the diffusion is less restricted by the membrane.

Indexed as

Molecular Dynamics SimulationProtonsCell MembraneDiffusionLipid BilayersPhosphatidic AcidsPhosphatidylcholinesLipid BilayersPhosphatidic AcidsPhosphatidylcholinesProtons

Identifiers

PMID38961623
PMCPMC11700359

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.