Evidence map›Paper›PMID 38961463›Full record

ArticleAntimicrobial resistance and infection control2024

Genomic characterization of Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae (KPC-Kp) strains circulating in three university hospitals in Northern Italy over three years.

Valeria Fox, Davide Mangioni, Silvia Renica, Agnese Comelli, Antonio Teri, Michela Zatelli, Beatrice Silvia Orena, Cristina Scuderi, Annalisa Cavallero, Marianna Rossi and 17 more

Abstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Valeria Fox *Department of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
Davide Mangioni *Infectious Diseases Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Silvia RenicaDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
Agnese ComelliInfectious Diseases Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Antonio TeriMicrobiology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Michela ZatelliResidency in Microbiology and Virology, Università degli Studi di Milano, Milan, Italy.
Beatrice Silvia OrenaMicrobiology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Cristina ScuderiMicrobiology Unit, Humanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Annalisa CavalleroMicrobiology Unit, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Marianna RossiInfectious Diseases Unit, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Maddalena CasanaInfectious Diseases Unit, Humanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Ludovica MelaInfectious Diseases Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Alessandra BielliComplex Unit of Clinical Microbiology, ASST Grande Ospedale Metropolitano Niguarda, Milan, Italy.
Rossana ScutariDepartment of Oncology and Hemato-Oncology, University of Milan, Milan, Italy.
Paola MorelliInfectious Diseases Unit, Humanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Lisa CarianiMicrobiology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Erminia CasariMicrobiology Unit, Humanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Chiara Silvia VismaraComplex Unit of Clinical Microbiology, ASST Grande Ospedale Metropolitano Niguarda, Milan, Italy.
Caterina MatinatoMicrobiology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Annapaola CallegaroMicrobiology Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Barbara BottazziHumanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Barbara CassaniHumanitas Clinical and Research Center IRCCS, Rozzano, Milan, Italy.
Carlo Federico PernoMultimodal Research Area, Bambino Gesù Children Hospital IRCCS, Rome, Italy.
Andrea GoriDepartment of Pathophysiology and Transplantation, University of Milan, Milan, Italy.
Antonio MuscatelloInfectious Diseases Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Alessandra Bandera *Infectious Diseases Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Claudia Alteri *Department of Oncology and Hemato-Oncology, University of Milan, Milan, Italy. claudia.alteri@unimi.it.

Funding

National Ministry of Health Starting Grant GR-2016-02362572
6 · The paper itself

Abstract

objectivesGenomic surveillance of Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae (KPC-Kp) is crucial for virulence, drug-resistance monitoring, and outbreak containment.

methodsGenomic analysis on 87 KPC-Kp strains isolated from 3 Northern Italy hospitals in 2019-2021 was performed by whole genome sequencing (WGS), to characterize resistome, virulome, and mobilome, and to assess potential associations with phenotype resistance and clinical presentation. Maximum Likelihood and Minimum Spanning Trees were used to determine strain correlations and identify potential transmission clusters.

resultsOverall, 15 different STs were found; the predominant ones included ST307 (35, 40.2%), ST512/1519 (15, 17.2%), ST20 (12, 13.8%), and ST101 (7, 8.1%). 33 (37.9%) KPC-Kp strains were noticed to be in five transmission clusters (median number of isolates in each cluster: 5 [3-10]), four of them characterized by intra-hospital transmission. All 87 strains harbored Tn4401a transposon, carrying bla

conclusionsIntegration of genomic, resistance score, and clinical data allowed us to define a relative diversification of KPC-Kp in Northern Italy between 2019 and 2021, characterized by few large transmission chains and rare inter-hospital transmission. Our results also provided initial evidence of correlation between KPC-Kp genomic signatures and higher MIC levels to some antimicrobial agents or colonization/infection status, once again underlining WGS's importance in bacterial surveillance.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsKlebsiella InfectionsKlebsiella pneumoniaebeta-LactamasesCross InfectionDrug Resistance, Multiple, BacterialGenome, BacterialGenomicsHospitals, UniversityHumansItalyMicrobial Sensitivity TestsWhole Genome SequencingAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasescarbapenemaseAntimicrobial resistance (AMR)Genomic epidemiologyK. pneumoniae carbapenemase-producing Klebsiella pneumoniae (KPC-Kp)WGS

Identifiers

PMID38961463
PMCPMC11223429

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