Evidence map›Paper›PMID 38961295›Full record

ArticleNature2024

Geographical migration and fitness dynamics of Streptococcus pneumoniae.

Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, Global Pneumococcal Sequencing Consortium, Lesley McGee, Shabir A Madhi, Anne von Gottberg and 2 more

Abstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Unpacking the spread of pathogens.Nature reviews. Microbiology · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Population Genetic Structure of Invasive and Non-InvasiveInternational journal of molecular sciences · 2025
    Article
  12. Clinical microbiology reviews · 2025
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Sophie BelmanParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK. sophie.belman@sanger.ac.uk.ORCID 0000-0002-9778-7174
Noémie LefrancqDepartment of Genetics, University of Cambridge, Cambridge, UK.ORCID 0000-0001-5991-6169
Susan NzenzeDivision of Public Health Surveillance and Response, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa.
Sarah DownsSouth African Medical Research Council Vaccines and Infectious Diseases Analytics Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID 0000-0001-5871-5373
Mignon du PlessisDepartment of Clinical Microbiology and Infectious Diseases, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID 0000-0001-9186-0679
Stephanie W LoParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.ORCID 0000-0002-2182-0222
Global Pneumococcal Sequencing Consortium
Lesley McGeeNational Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Shabir A MadhiSouth African Medical Research Council Vaccines and Infectious Diseases Analytics Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID 0000-0002-7629-0636
Anne von GottbergDepartment of Clinical Microbiology and Infectious Diseases, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Stephen D BentleyParasites and Microbes, Wellcome Sanger Institute, Hinxton, UK.ORCID 0000-0001-8094-3751
Henrik SaljeDepartment of Genetics, University of Cambridge, Cambridge, UK.ORCID 0000-0003-3626-4254

Funding

Human mobility models to forecast disease dynamics and the effectiveness of public health interventionsR01AI160780 · NIAID · JOHNS HOPKINS UNIVERSITY · PI CUMMINGS, DEREK A, WESOLOWSKI, AMY · 2021 to 2025
$3.3M
Southern African-Pittsburgh Public Health Genomic Epidemiology Training Program (SAPPHGenE)D43TW011255 · FIC · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Lee H Harrison, Anne von Gottberg · 2019 to 2026
$1.7M
FIC NIH HHS D43 TW011255NIAID NIH HHS R01 AI160780Wellcome Trust
6 · The paper itself

Abstract

Streptococcus pneumoniae is a leading cause of pneumonia and meningitis worldwide. Many different serotypes co-circulate endemically in any one location

Indexed as

Genetic FitnessGeographic MappingStreptococcus pneumoniaeGenome, BacterialHeptavalent Pneumococcal Conjugate VaccineHumansLocomotionPenicillin ResistancePenicillinsPneumococcal InfectionsPneumococcal VaccinesSerogroupSouth AfricaVaccines, ConjugateHeptavalent Pneumococcal Conjugate VaccinePenicillinsPneumococcal VaccinesVaccines, Conjugate

Identifiers

PMID38961295
PMCPMC11236706

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.