Evidence map›Paper›PMID 38960996›Full record

ArticlePlant cell reports2024

Identification of candidate gene associated with maize northern leaf blight resistance in a multi-parent population.

Yaqi Bi, Fuyan Jiang, Xingfu Yin, Ranjan K Shaw, Ruijia Guo, Jing Wang, Xingming Fan

Abstract read
In one paragraph

Article in Plant cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yaqi BiInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Fuyan JiangInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Xingfu YinInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Ranjan K ShawInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Ruijia GuoInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Jing WangInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China.
Xingming FanInstitute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, China. xingmingfan@163.com.ORCID http://orcid.org/0009-0009-4742-9246

Funding

National Natural Science Foundation of China 31961143014Yunnan Seed Laboratory 202205AR070001
6 · The paper itself

Abstract

key messageQTL mapping combined with genome-wide association studies, revealed a potential candidate gene for  resistance to northern leaf blight in the tropical CATETO-related maize line YML226, providing a basis for marker-assisted selection of maize varieties Northern leaf blight (NLB) is a foliar disease that can cause severe yield losses in maize. Identifying and utilizing NLB-resistant genes is the most effective way to prevent and control this disease. In this study, five important inbred lines of maize were used as parental lines to construct a multi-parent population for the identification of NLB-resistant loci. QTL mapping and GWAS analysis revealed that QTL qtl_YML226_1, which had the largest phenotypic variance explanation (PVE) of 9.28%, and SNP 5-49,193,921 were co-located in the CATETO-related line YML226. This locus was associated with the candidate gene Zm00001d014471, which encodes a pentatricopeptide repeat (PPR) protein. In the coding region of Zm00001d014471, YML226 had more specific SNPs than the other parental lines. qRT-PCR showed that the relative expressions of Zm00001d014471 in inoculated and uninoculated leaves of YML226 were significantly higher, indicating that the expression of the candidate gene was correlated with NLB resistance. The analysis showed that the higher expression level in YML226 might be caused by SNP mutations. This study identified NLB resistance candidate loci and genes in the tropical maize inbred line YML226 derived from the CATETO germplasm, thereby providing a theoretical basis for using modern marker-assisted breeding techniques to select genetic resources resistant to NLB.

Indexed as

Chromosome MappingDisease ResistanceGenome-Wide Association StudyPlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociZea maysGenes, PlantPhenotypePlant LeavesPlant ProteinsPlant ProteinsCATETO germplasmGenome-wide association analysisMulti-parent populationNorthern leaf blightQTL mappingZea mays

Identifiers

PMID38960996
PMCPMC11222180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.