Evidence map›Paper›PMID 38958433›Full record

ArticleDatabase : the journal of biological databases and curation2024

MyxoPortal: a database of myxobacterial genomic features.

Rayapadi G Swetha, Benita S Arakal, Santhosh Rajendran, K Sekar, David E Whitworth, Sudha Ramaiah, Philip E James, Paul G Livingstone, Anand Anbarasu

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Rayapadi G SwethaSchool of Bio-Sciences and Technology, Vellore Institute of Technology, Vellore Campus, Tiruvalam Road, Katpadi, Vellore, Tamil Nadu 632 014, India.
Benita S ArakalSchool of Sports and Health Sciences, Cardiff Metropolitan University, Llandaff campus, Western Avenue, Cardiff CF5 2YB, UK.
Santhosh RajendranDepartment of Computational and Data Sciences, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka 560 012, India.
K SekarDepartment of Computational and Data Sciences, Indian Institute of Science, CV Raman Road, Bengaluru, Karnataka 560 012, India.
David E WhitworthDepartment of Life Sciences, Aberystwyth University, Cledwyn Building, Penglais Campus, Aberystwyth, Ceredigion, Wales SY23 3FL, UK.
Sudha RamaiahSchool of Bio-Sciences and Technology, Vellore Institute of Technology, Vellore Campus, Tiruvalam Road, Katpadi, Vellore, Tamil Nadu 632 014, India.
Philip E JamesSchool of Sports and Health Sciences, Cardiff Metropolitan University, Llandaff campus, Western Avenue, Cardiff CF5 2YB, UK.
Paul G LivingstoneSchool of Sports and Health Sciences, Cardiff Metropolitan University, Llandaff campus, Western Avenue, Cardiff CF5 2YB, UK.ORCID 0000-0002-1694-305X
Anand AnbarasuSchool of Bio-Sciences and Technology, Vellore Institute of Technology, Vellore Campus, Tiruvalam Road, Katpadi, Vellore, Tamil Nadu 632 014, India.

Funding

Indian Council of Medical Research Adhoc/290/2022-ECD-II
6 · The paper itself

Abstract

Myxobacteria are predatory bacteria with antimicrobial activity, utilizing complex mechanisms to kill their prey and assimilate their macromolecules. Having large genomes encoding hundreds of secondary metabolites, hydrolytic enzymes and antimicrobial peptides, these organisms are widely studied for their antibiotic potential. MyxoPortal is a comprehensive genomic database hosting 262 genomes of myxobacterial strains. Datasets included provide genome annotations with gene locations, functions, amino acids and nucleotide sequences, allowing analysis of evolutionary and taxonomical relationships between strains and genes. Biosynthetic gene clusters are identified by AntiSMASH, and dbAMP-generated antimicrobial peptide sequences are included as a resource for novel antimicrobial discoveries, while curated datasets of CRISPR/Cas genes, regulatory protein sequences, and phage associated genes give useful insights into each strain's biological properties. MyxoPortal is an intuitive open-source database that brings together application-oriented genomic features that can be used in taxonomy, evolution, predation and antimicrobial research. MyxoPortal can be accessed at http://dicsoft1.physics.iisc.ac.in/MyxoPortal/. Database URL:  http://dicsoft1.physics.iisc.ac.in/MyxoPortal/. Graphical Abstract.

Indexed as

Databases, GeneticGenome, BacterialMyxococcalesGenomics

Identifiers

PMID38958433
PMCPMC11219305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.