Evidence map›Paper›PMID 38958075›Full record

ReviewDevelopment (Cambridge, England)2024

Exploring the reciprocity between pioneer factors and development.

Meghan M Freund, Melissa M Harrison, Eliana F Torres-Zelada

Abstract readReview
In one paragraph

Review in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Meghan M FreundDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 52706, USA.ORCID 0000-0001-9608-5042
Melissa M HarrisonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 52706, USA.ORCID 0000-0002-8228-6836
Eliana F Torres-ZeladaDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 52706, USA.ORCID 0000-0002-6843-3529

Funding

Genomic reprogramming in the early embryoR35GM136298 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Melissa Harrison · 2020 to 2026
$2.8M
Shared mechanisms regulate transcription-factor activity to control cell fate in neural stem cells and the embryoR01NS111647 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI HARRISON, MELISSA, LEE, CHENG-YU · 2019 to 2023
$1.7M
Effects of Vasoactive Drugs on Perfusion in Septic ShockK23GM000713 · NIGMS · UNIVERSITY OF CHICAGO · PI MURRAY, PATRICK T · 2001 to 2005
$621k
NIGMS NIH HHS K23 GM000713NIGMS NIH HHS R35 GM136298NIH HHS R35 GM136298NINDS NIH HHS R01 NS111647University of Wisconsin-Madison
6 · The paper itself

Abstract

Development is regulated by coordinated changes in gene expression. Control of these changes in expression is largely governed by the binding of transcription factors to specific regulatory elements. However, the packaging of DNA into chromatin prevents the binding of many transcription factors. Pioneer factors overcome this barrier owing to unique properties that enable them to bind closed chromatin, promote accessibility and, in so doing, mediate binding of additional factors that activate gene expression. Because of these properties, pioneer factors act at the top of gene-regulatory networks and drive developmental transitions. Despite the ability to bind target motifs in closed chromatin, pioneer factors have cell type-specific chromatin occupancy and activity. Thus, developmental context clearly shapes pioneer-factor function. Here, we discuss this reciprocal interplay between pioneer factors and development: how pioneer factors control changes in cell fate and how cellular environment influences pioneer-factor binding and activity.

Indexed as

ChromatinGene Expression Regulation, DevelopmentalTranscription FactorsAnimalsGene Regulatory NetworksHumansProtein BindingChromatinTranscription FactorsChromatinGene-regulatory networkPioneer factor

Identifiers

PMID38958075
PMCPMC11266817

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.