Evidence map›Paper›PMID 38957960›Full record

ArticleJournal of chemical theory and computation2024

Parsing Dynamics of Protein Backbone NH and Side-Chain Methyl Groups using Molecular Dynamics Simulations.

Nooriel E Banayan, Andrew Hsu, John F Hunt, Arthur G Palmer, Richard A Friesner

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. A steady-state approach for analysis of high-resolution relaxometry.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2025
    Article
  4. Article
  5. Anisotropic Dynamics of Protein Side Chain NHThe journal of physical chemistry letters · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nooriel E BanayanDepartment of Biological Sciences, Columbia University, 3000 Broadway, New York, New York 10027, United States.
Andrew HsuDepartment of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States.ORCID 0000-0001-7728-5428
John F HuntDepartment of Biological Sciences, Columbia University, 3000 Broadway, New York, New York 10027, United States.ORCID 0000-0003-0034-5167
Arthur G PalmerDepartment of Biochemistry and Molecular Biophysics, Columbia University, 701 West 168th Street, New York, New York 10032, United States.ORCID 0000-0002-2770-0053
Richard A FriesnerDepartment of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States.ORCID 0000-0002-1708-9342

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2010 to 2014
$36.9M
STRUCTURAL GENOMICS OF EUKARYOTIC MODEL ORGANISMSP50GM062413 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI MONTELIONE, GAETANO T · 2000 to 2004
$33.5M
TRAINING PROGRAM IN MOLECULAR BIOPHYSICST32GM008281 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PALMER, ARTHUR G · 1988 to 2017
$5.4M
Macromolecular dynamics and conformational changes in biological functionR35GM130398 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ARTHUR G PALMER · 2019 to 2026
$4.6M
Rational Engineering of Improved Protein CrystallizationR01GM127883 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HUNT, JOHN FRANCIS · 2018 to 2021
$1.3M
NIGMS NIH HHS P50 GM062413NIGMS NIH HHS R01 GM127883NIGMS NIH HHS R35 GM130398NIGMS NIH HHS T32 GM008281NIGMS NIH HHS U54 GM094597
6 · The paper itself

Abstract

Experimental NMR spectroscopy and theoretical molecular dynamics (MD) simulations provide complementary insights into protein conformational dynamics and hence into biological function. The present work describes an extensive set of backbone NH and side-chain methyl group generalized order parameters for the

Indexed as

Escherichia coliMolecular Dynamics SimulationRibonuclease HNuclear Magnetic Resonance, BiomolecularProtein ConformationRibonuclease Hribonuclease HI

Identifiers

PMID38957960
PMCPMC11528701

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.