Evidence map›Paper›PMID 38957923›Full record

ArticleGenome biology and evolution2024

De Novo Long-Read Genome Assembly and Annotation of the Luna Moth (Actias luna) Fully Resolves Repeat-Rich Silk Genes.

Amanda Markee, Rebekah Keating Godfrey, Paul B Frandsen, Yi-Ming Weng, Deborah A Triant, Akito Y Kawahara

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Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Amanda MarkeeMcGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0001-7421-6339
Rebekah Keating GodfreyDepartment of Biological Sciences, Florida International University, Miami, FL 33199, USA.
Paul B FrandsenDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602, USA.ORCID 0000-0002-4801-7579
Yi-Ming WengMcGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.
Deborah A TriantDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Akito Y KawaharaMcGuire Center for Lepidoptera and Biodiversity, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA.

Funding

Florida Museum of Natural HistoryMcGuire Center for Lepidoptera and BiodiversityMGCLNational Science Foundation 1938103SNRE MCB-2217159UF-ROFUniversity of Florida Research Opportunity Fund
6 · The paper itself

Abstract

We present the first long-read de novo assembly and annotation of the luna moth (Actias luna) and provide the full characterization of heavy chain fibroin (h-fibroin), a long and highly repetitive gene (>20 kb) essential in silk fiber production. There are >160,000 described species of moths and butterflies (Lepidoptera), but only within the last 5 years have we begun to recover high-quality annotated whole genomes across the order that capture h-fibroin. Using PacBio HiFi reads, we produce the first high-quality long-read reference genome for this species. The assembled genome has a length of 532 Mb, a contig N50 of 16.8 Mb, an L50 of 14 contigs, and 99.4% completeness (BUSCO). Our annotation using Bombyx mori protein and A. luna RNAseq evidence captured a total of 20,866 genes at 98.9% completeness with 10,267 functionally annotated proteins and a full-length h-fibroin annotation of 2,679 amino acid residues.

Indexed as

FibroinsGenome, InsectMolecular Sequence AnnotationMothsAnimalsBombyxInsect ProteinsRepetitive Sequences, Nucleic AcidSilkFibroinsInsect ProteinsSilkfibroingenomeLepidopteramothPacBiosilk

Identifiers

PMID38957923
PMCPMC11258402

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.