Evidence map›Paper›PMID 38957709›Full record

ArticleInternational journal of chronic obstructive pulmonary disease2024

Pyroptosis-Related Genes as Diagnostic Markers in Chronic Obstructive Pulmonary Disease and Its Correlation with Immune Infiltration.

Hong-Mei Shu, Chang-Qing Lin, Bei He, Wang Wang, Ling Wang, Ting Wu, Hai-Juan He, Hui-Juan Wang, He-Ping Zhou, Guo-Zheng Ding

Abstract read
In one paragraph

Article in International journal of chronic obstructive pulmonary disease, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hong-Mei Shu *Department of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.ORCID 0000-0003-4631-9079
Chang-Qing LinDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
Bei HeDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
Wang WangDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.ORCID 0000-0003-1904-1542
Ling WangDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
Ting WuDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
Hai-Juan HeDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
Hui-Juan WangDepartment of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.
He-Ping ZhouNeurosurgery Department, Anqing Municipal Hospital, Anhui, People's Republic of China.
Guo-Zheng Ding *Department of Pulmonary and Critical Care Medicine, Anqing Municipal Hospital, Anhui, People's Republic of China.

Funding

Anhui Provincial Key Research and Development Project 2022E07020052 TO Z.H.PHealth Research Program of Anhui AHWJ2022B099 TO S.H.M
6 · The paper itself

Abstract

Background: Chronic obstructive pulmonary disease (COPD) stands as a predominant cause of global morbidity and mortality. This study aims to elucidate the relationship between pyroptosis-related genes (PRGs) and COPD diagnosis in the context of immune infiltration, ultimately proposing a PRG-based diagnostic model for predicting COPD outcomes. Methods: Clinical data and PRGs of COPD patients were sourced from the GEO database. The "ConsensusClusterPlus" package was employed to generate molecular subtypes derived from PRGs that were identified through differential expression analysis and LASSO Cox analysis. A diagnostic signature including eight genes (CASP4, CASP5, ELANE, GPX4, NLRP1, GSDME, NOD1and IL18) was also constructed. Immune cell infiltration calculated by the ESTIMATE score, Stroma scores and Immune scores were also compared on the basis of pyroptosis-related molecular subtypes and the risk signature. We finally used qRT - PCR to detect the expression levels of eight genes in COPD patient and normal. Results: The diagnostic model, anchored on eight PRGs, underwent validation with an independent experimental cohort. The area under the receiver operating characteristic (ROC) curves (AUC) for the diagnostic model showcased values of 0.809, 0.765, and 0.956 for the GSE76925, GSE8545, and GSE5058 datasets, respectively. Distinct expression patterns and clinical attributes of PRGs were observed between the comparative groups, with functional analysis underscoring a disparity in immune-related functions between them. Conclusion: In this study, we developed a potential as diagnostic biomarkers for COPD and have a significant role in modulating the immune response. Such insights pave the way for novel diagnostic and therapeutic strategies for COPD.

Indexed as

Databases, GeneticPredictive Value of TestsPulmonary Disease, Chronic ObstructivePyroptosisAgedCase-Control StudiesFemaleGene Expression ProfilingGenetic MarkersGenetic Predisposition to DiseaseHumansLungMaleMiddle AgedPrognosisReproducibility of ResultsGenetic Markersbiomarkerschronic obstructive pulmonary diseasegeneimmune Infiltrationpyroptosis

Identifiers

PMID38957709
PMCPMC11217143

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.