Evidence map›Paper›PMID 38956836›Full record

ArticleEpigenetics2024

Dynamics of DNA methylation during osteogenic differentiation of porcine synovial membrane mesenchymal stem cells from two metabolically distinct breeds.

Shuaichen Li, Puntita Siengdee, Frieder Hadlich, Nares Trakooljul, Michael Oster, Henry Reyer, Klaus Wimmers, Siriluck Ponsuksili

Abstract read
In one paragraph

Article in Epigenetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shuaichen LiInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Puntita SiengdeeInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Frieder HadlichInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Nares TrakooljulInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Michael OsterInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Henry ReyerInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Klaus WimmersInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.
Siriluck PonsuksiliInstitute of Genome Biology, Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany.ORCID 0000-0003-4714-1057

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mesenchymal stem cells (MSCs), with the ability to differentiate into osteoblasts, adipocytes, or chondrocytes, show evidence that the donor cell's metabolic type influences the osteogenic process. Limited knowledge exists on DNA methylation changes during osteogenic differentiation and the impact of diverse donor genetic backgrounds on MSC differentiation. In this study, synovial membrane mesenchymal stem cells (SMSCs) from two pig breeds (Angeln Saddleback, AS; German Landrace, DL) with distinct metabolic phenotypes were isolated, and the methylation pattern of SMSCs during osteogenic induction was investigated. Results showed that most differentially methylated regions (DMRs) were hypomethylated in osteogenic-induced SMSC group. These DMRs were enriched with genes of different osteogenic signalling pathways at different time points including Wnt, ECM, TGFB and BMP signalling pathways. AS pigs consistently exhibited a higher number of hypermethylated DMRs than DL pigs, particularly during the peak of osteogenesis (day 21). Predicting transcription factor motifs in regions of DMRs linked to osteogenic processes and donor breeds revealed influential motifs, including

Indexed as

Cell DifferentiationDNA MethylationMesenchymal Stem CellsOsteogenesisSynovial MembraneAnimalsCells, CulturedEpigenesis, GeneticSwineDNA methylationEpigenetic patternMesenchymal stem cellsOsteogenic differentiationPig breeds

Identifiers

PMID38956836
PMCPMC11225923

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.