Evidence map›Paper›PMID 38956687›Full record

ArticleBiology direct2024

Genomic characteristics and evolution of Multicentric Esophageal and gastric Cardiac Cancer.

Xi Liu, Lijun Cai, Juan Ji, Dongping Tian, Yi Guo, Shaobin Chen, Meng Zhao, Min Su

Abstract read
In one paragraph

Article in Biology direct, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xi LiuInstitute of Clinical Pathology, Department of Pathology, Shantou University Medical College, Shantou, Guangdong, 515041, China.
Lijun CaiInstitute of Clinical Pathology, Department of Pathology, Shantou University Medical College, Shantou, Guangdong, 515041, China.
Juan JiInstitute of Clinical Pathology, Department of Pathology, Shantou University Medical College, Shantou, Guangdong, 515041, China.
Dongping TianInstitute of Clinical Pathology, Department of Pathology, Shantou University Medical College, Shantou, Guangdong, 515041, China.
Yi GuoCancer Hospital of Shantou University Medical College, Shantou, Guangdong, 515041, China.
Shaobin ChenCancer Hospital of Shantou University Medical College, Shantou, Guangdong, 515041, China.
Meng ZhaoNovogene Co., LTD, Beijing, 100083, China.
Min SuInstitute of Clinical Pathology, Department of Pathology, Shantou University Medical College, Shantou, Guangdong, 515041, China. minsu@stu.edu.cn.

Funding

Innovative Team Grant of Guangdong Department of Education 2020KCXTD033National Natural Science Foundation of China 81802835National Natural Science Foundation of China 82073290, 81772997
6 · The paper itself

Abstract

backgroundEsophageal carcinoma (EC) and gastric cardiac adenocarcinoma (GCA) have high incidence rates in the Chaoshan region of South China. Multifocal esophageal and cardiac cancer (MECC) is commonly observed in this region in clinical practice. However, the genomic characteristics of MECC remains unclear. MATERIALS AND

methodsIn this study, a total of 2123 clinical samples of EC and GCA were analyzed to determine the frequency of multifocal tumors, as well as their occurrence sites and pathological types. Cox proportional hazards regression was used to model the relationship between age, sex, and tumor state concerning survival in our analysis of the cohort of 541 patients with available follow-up data. We performed whole-genome sequencing on 20 tumor foci and 10 normal samples from 10 MECC patients to infer clonal structure on 6 MECC patients to explore genome characteristics.

resultThe MECC rate of EC and GCA was 5.65% (121 of 2123). Age and sex were potential factors that may influence the risk of MECC (p < 0.001). Furthermore, MECC patients showed worse survival compared with single tumor patients. We found that 12 foci from 6 patients were multicentric origin model (MC), which exhibited significant heterogeneity of variations in paired foci and had an increased number of germline mutations in immune genes compared to metastatic model. In MC cases, different lesions in the same patient were driven by distinct mutation and copy number variation (CNV) events. Although TP53 and other driver mutation genes have a high frequency in the samples, their mutation sites show significant heterogeneity in paired tumor specimens. On the other hand, CNV genes exhibited higher concordance in paired samples, especially in the amplification of oncogenes and the deletion of tumor suppressor genes.

conclusionsThe extent of inter-tumor heterogeneity suggests both monoclonal and polyclonal origins of MECC, which could provide insight into the genome diversity of MECC and guide clinical implementation.

Indexed as

Esophageal NeoplasmsStomach NeoplasmsAdenocarcinomaAdultAgedChinaFemaleGenomicsHumansMaleMiddle AgedWhole Genome SequencingClonality analysisGenomic featuresMultiple cancerSequencing

Identifiers

PMID38956687
PMCPMC11218177

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.