Evidence map›Paper›PMID 38956413›Full record

ArticleNature communications2024

Environmental circadian disruption re-writes liver circadian proteomes.

Hao A Duong, Kenkichi Baba, Jason P DeBruyne, Alec J Davidson, Christopher Ehlen, Michael Powell, Gianluca Tosini

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Reconsidering mammalian circadian organization.Neurobiology of sleep and circadian rhythms · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Hao A DuongDepartment of Pharmacology and Toxicology, Morehouse School of Medicine, Atlanta, GA, 30310, USA. hduong@msm.edu.ORCID 0000-0002-2460-5915
Kenkichi BabaDepartment of Pharmacology and Toxicology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.
Jason P DeBruyneDepartment of Pharmacology and Toxicology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.ORCID 0000-0001-9803-9568
Alec J DavidsonDepartment of Neurobiology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.ORCID 0000-0003-4205-1968
Christopher EhlenDepartment of Neurobiology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.ORCID 0000-0003-3223-9262
Michael PowellDepartment of Microbiology, Biochemistry and Immunology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.
Gianluca TosiniDepartment of Pharmacology and Toxicology, Morehouse School of Medicine, Atlanta, GA, 30310, USA.ORCID 0000-0003-3645-4533

Funding

Training the Trainers: Building Institutional Data Science Capacity to Support Health Disparities ResearchU54MD007602 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI Lilly Hsi-Chih Immergluck · 2018 to 2026
$47.6M
TRANSCRIPTION FACTORS AND PROSTATE CANCERG12RR003034 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI LIU, DONG · 1986 to 2011
$32.4M
Roles of protein degradation in the circadian clockR35GM127044 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI JASON P DEBRUYNE · 2018 to 2026
$3.2M
Visualizing hierarchical processing of photic input to the circadian clock in vivoR35GM136661 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI DAVIDSON, ALEC J · 2020 to 2024
$2.2M
Circadian regulation of RPE functionsR01EY026291 · NEI · MOREHOUSE SCHOOL OF MEDICINE · PI TOSINI, GIANLUCA · 2016 to 2020
$2.1M
The retinal clock modulates cell viability, retinal circuitry and locomotor activity rhythmSC1GM135112 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI BABA, KENKICHI · 2021 to 2024
$1.4M
Defining the role of sleep in resilience to social stressSC1GM127260 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI EHLEN, JOHN CHRISTOPHER · 2018 to 2021
$1.4M
Potential Role of Compass H3K4 Methyltransferase Complexes in Environmental Circadian-AlignmentR16GM146703 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI DUONG, HAO · 2022 to 2025
$806k
Melatonin Signaling in PhotoreceptorsR21EY031821 · NEI · MOREHOUSE SCHOOL OF MEDICINE · PI TOSINI, GIANLUCA · 2021 to 2022
$441k
NCRR NIH HHS G12 RR003034NEI NIH HHS R01 EY026291NEI NIH HHS R21 EY031821NIGMS NIH HHS R16 GM146703NIGMS NIH HHS R35 GM127044NIGMS NIH HHS R35 GM136661NIGMS NIH HHS SC1 GM127260NIGMS NIH HHS SC1 GM135112NIMHD NIH HHS U54 MD007602U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R16GM146703-01
6 · The paper itself

Abstract

Circadian gene expression is fundamental to the establishment and functions of the circadian clock, a cell-autonomous and evolutionary-conserved timing system. Yet, how it is affected by environmental-circadian disruption (ECD) such as shiftwork and jetlag are ill-defined. Here, we provided a comprehensive and comparative description of male liver circadian gene expression, encompassing transcriptomes, whole-cell proteomes and nuclear proteomes, under normal and after ECD conditions. Under both conditions, post-translation, rather than transcription, is the dominant contributor to circadian functional outputs. After ECD, post-transcriptional and post-translational processes are the major contributors to whole-cell or nuclear circadian proteome, respectively. Furthermore, ECD re-writes the rhythmicity of 64% transcriptome, 98% whole-cell proteome and 95% nuclear proteome. The re-writing, which is associated with changes of circadian regulatory cis-elements, RNA-processing and protein localization, diminishes circadian regulation of fat and carbohydrate metabolism and persists after one week of ECD-recovery.

Indexed as

Circadian ClocksCircadian RhythmLiverProteomeAnimalsGene Expression RegulationJet Lag SyndromeMaleMiceMice, Inbred C57BLShift Work ScheduleTranscriptomeProteome

Identifiers

PMID38956413
PMCPMC11220080

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.