Evidence map›Paper›PMID 38956063›Full record

ArticleScientific data2024

HVSMR-2.0: A 3D cardiovascular MR dataset for whole-heart segmentation in congenital heart disease.

Danielle F Pace, Hannah T M Contreras, Jennifer Romanowicz, Shruti Ghelani, Imon Rahaman, Yue Zhang, Patricia Gao, Mohammad Imrul Jubair, Tom Yeh, Polina Golland and 4 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Danielle F PaceA.A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston, MA, USA. dfpace@mgh.harvard.edu.ORCID 0000-0002-5428-9538
Hannah T M ContrerasComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Jennifer RomanowiczDepartment of Pediatrics, Section of Cardiology, Children's Hospital Colorado, Aurora, CO, USA.
Shruti Ghelani *Department of Computer Science, University of Massachusetts Boston, Boston, MA, USA.
Imon Rahaman *Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Yue Zhang *Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-3148-8833
Patricia GaoComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0009-0004-7658-2542
Mohammad Imrul JubairDepartment of Computer Science, University of Colorado Boulder, Boulder, CO, USA.ORCID 0000-0003-0112-7524
Tom YehDepartment of Computer Science, University of Colorado Boulder, Boulder, CO, USA.
Polina GollandComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Tal GevaDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA.
Sunil GhelaniDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA.
Andrew J PowellDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA.
Mehdi Hedjazi MoghariDepartment of Cardiology, Boston Children's Hospital, Boston, MA, USA.

Funding

Training and DisseminationP41EB015902 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI KIKINIS, RON, WESTIN, CARL-FREDRIK · 2012 to 2022
$20.9M
Deep Learning Algorithms for FreeSurferR01AG064027 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI FISCHL, BRUCE · 2020 to 2024
$3.4M
Segmenting Brain Structures for Neurological DisordersR01NS105820 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI Bruce Fischl · 2019 to 2026
$3.2M
Simulating Cardiac Surgery for Children with Severe Congenital Heart DiseaseR01HL149807 · NHLBI · WEST VIRGINIA UNIVERSITY · PI HEDJAZI MOGHARI, MEHDI · 2020 to 2024
$2.0M
Deep Learning Algorithms for FreeSurferR56AG064027 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI FISCHL, BRUCE · 2019 to 2019
$610k
Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada (NSERC Canadian Network for Research and Innovation in Machining Technology) CGS-DNHLBI NIH HHS R01 HL149807NIA NIH HHS R01 AG064027NIA NIH HHS R56 AG064027NIBIB NIH HHS P41 EB015902NINDS NIH HHS R01 NS105820U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL149807U.S. Department of Health & Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering (NIBIB) P41EB015902U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS105820U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG064027U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R56AG064027
6 · The paper itself

Abstract

Patients with congenital heart disease often have cardiac anatomy that deviates significantly from normal, frequently requiring multiple heart surgeries. Image segmentation from a preoperative cardiovascular magnetic resonance (CMR) scan would enable creation of patient-specific 3D surface models of the heart, which have potential to improve surgical planning, enable surgical simulation, and allow automatic computation of quantitative metrics of heart function. However, there is no publicly available CMR dataset for whole-heart segmentation in patients with congenital heart disease. Here, we release the HVSMR-2.0 dataset, comprising 60 CMR scans alongside manual segmentation masks of the 4 cardiac chambers and 4 great vessels. The images showcase a wide range of heart defects and prior surgical interventions. The dataset also includes masks of required and optional extents of the great vessels, enabling fairer comparisons across algorithms. Detailed diagnoses for each subject are also provided. By releasing HVSMR-2.0, we aim to encourage development of robust segmentation algorithms and clinically relevant tools for congenital heart disease.

Indexed as

HeartHeart Defects, CongenitalImaging, Three-DimensionalMagnetic Resonance ImagingAlgorithmsHumans

Identifiers

PMID38956063
PMCPMC11219801

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.