Evidence map›Paper›PMID 38952028›Full record

ArticleThe New phytologist2024

Arabidopsis PROTODERMAL FACTOR2 binds lysophosphatidylcholines and transcriptionally regulates phospholipid metabolism.

Izabela Wojciechowska, Thiya Mukherjee, Patrick Knox-Brown, Xueyun Hu, Aashima Khosla, Bibek Subedi, Bilal Ahmad, Graham L Mathews, Ashley A Panagakis, Kyle A Thompson and 6 more

Abstract read
In one paragraph

Article in The New phytologist, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
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  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Cavity architecture based modulation of ligand binding tunnels in plant START domains.Computational and structural biotechnology journal · 2023
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Izabela WojciechowskaMax Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany.
Thiya MukherjeeDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0000-0003-4053-4501
Patrick Knox-BrownPhysical Biochemistry, University of Potsdam, 14476, Potsdam, Germany.ORCID 0000-0002-0554-5670
Xueyun HuDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0000-0002-8288-3155
Aashima KhoslaDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0000-0001-8533-4269
Bibek SubediDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0000-0002-3105-5616
Bilal AhmadDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0009-0007-2292-2195
Graham L MathewsDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Ashley A PanagakisDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Kyle A ThompsonDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Sophie T PeeryDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.
Jagoda SzlachetkoMax Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany.ORCID 0000-0001-8779-3442
Anja ThalhammerPhysical Biochemistry, University of Potsdam, 14476, Potsdam, Germany.ORCID 0000-0002-6480-0993
Dirk K HinchaMax Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany.
Aleksandra SkiryczMax Planck Institute of Molecular Plant Physiology, 14476, Potsdam, Germany.ORCID 0000-0002-7627-7925
Kathrin SchrickDivision of Biology, Kansas State University, Manhattan, KS, 66506, USA.ORCID 0000-0001-8006-5944

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SUSAN J. BROWN · 2012 to 2026
$63.0M
Agricultural Research Service 1013013Division of Molecular and Cellular Biosciences MCB1616818Johnson Cancer Research Center, Kansas State UniversityNational Science Foundation 2226270NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20GM103418
6 · The paper itself

Abstract

Plant homeodomain leucine zipper IV (HD-Zip IV) transcription factors (TFs) contain an evolutionarily conserved steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain. While the START domain is required for TF activity, its presumed role as a lipid sensor is not clear. Here we used tandem affinity purification from Arabidopsis cell cultures to demonstrate that PROTODERMAL FACTOR2 (PDF2), a representative member that controls epidermal differentiation, recruits lysophosphatidylcholines (LysoPCs) in a START-dependent manner. Microscale thermophoresis assays confirmed that a missense mutation in a predicted ligand contact site reduces lysophospholipid binding. We additionally found that PDF2 acts as a transcriptional regulator of phospholipid- and phosphate (Pi) starvation-related genes and binds to a palindromic octamer with consensus to a Pi response element. Phospholipid homeostasis and elongation growth were altered in pdf2 mutants according to Pi availability. Cycloheximide chase experiments revealed a role for START in maintaining protein levels, and Pi starvation resulted in enhanced protein destabilization, suggesting a mechanism by which lipid binding controls TF activity. We propose that the START domain serves as a molecular sensor for membrane phospholipid status in the epidermis. Our data provide insights toward understanding how the lipid metabolome integrates Pi availability with gene expression.

Indexed as

ArabidopsisArabidopsis ProteinsLysophosphatidylcholinesPhospholipidsProtein BindingGene Expression Regulation, PlantHomeodomain ProteinsHomeostasisMutationPhosphatesTranscription FactorsTranscription, GeneticArabidopsis ProteinsHomeodomain ProteinsLysophosphatidylcholinesPDF2 protein, ArabidopsisPhosphatesPhospholipidsTranscription FactorsArabidopsisHD‐Zip IV transcription factorslipidomicslysophospholipidsphosphateSTART domain

Identifiers

PMID38952028
PMCPMC11486602

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.