Evidence map›Paper›PMID 38951700›Full record

ReviewCell death and differentiation2024

Determinants of p53 DNA binding, gene regulation, and cell fate decisions.

Martin Fischer, Morgan A Sammons

Abstract readReview
In one paragraph

Review in Cell death and differentiation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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  20. Prunin: An Emerging Anticancer Flavonoid.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Martin Fischer *Computational Biology Group, Leibniz Institute on Aging - Fritz Lipmann Institute (FLI), Beutenbergstraße 11, 07745, Jena, Germany. Martin.Fischer@leibniz-fli.de.ORCID 0000-0002-3429-1876
Morgan A Sammons *Department of Biological Sciences and The RNA Institute, The State University of New York at Albany, 1400 Washington Avenue, Albany, NY, 12222, USA. masammons@albany.edu.ORCID 0000-0002-5329-1169

Funding

Defining cis-regulatory networks controlling a core stress responseR35GM138120 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI SAMMONS, MORGAN ANDREW · 2020 to 2024
$1.8M
Deutsche Forschungsgemeinschaft (German Research Foundation) FI 1993/7-1Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) GM138120NIGMS NIH HHS R35 GM138120
6 · The paper itself

Abstract

The extent to which transcription factors read and respond to specific information content within short DNA sequences remains an important question that the tumor suppressor p53 is helping us answer. We discuss recent insights into how local information content at p53 binding sites might control modes of p53 target gene activation and cell fate decisions. Significant prior work has yielded data supporting two potential models of how p53 determines cell fate through its target genes: a selective target gene binding and activation model and a p53 level threshold model. Both of these models largely revolve around an analogy of whether p53 is acting in a "smart" or "dumb" manner. Here, we synthesize recent and past studies on p53 decoding of DNA sequence, chromatin context, and cellular signaling cascades to elicit variable cell fates critical in human development, homeostasis, and disease.

Indexed as

Gene Expression RegulationTumor Suppressor Protein p53AnimalsBinding SitesCell DifferentiationChromatinDNAHumansProtein BindingSignal TransductionChromatinDNATumor Suppressor Protein p53

Identifiers

PMID38951700
PMCPMC11239874

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.