Evidence map›Paper›PMID 38951619›Full record

ArticleCommunications biology2024

Nucleoporin Elys attaches peripheral chromatin to the nuclear pores in interphase nuclei.

Semen A Doronin, Artem A Ilyin, Anna D Kononkova, Mikhail A Solovyev, Oxana M Olenkina, Valentina V Nenasheva, Elena A Mikhaleva, Sergey A Lavrov, Anna Y Ivannikova, Ruslan A Simonov and 5 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Cells · 2025
    Review
  7. Article
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  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Semen A Doronin *Laboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Artem A Ilyin *Laboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Anna D Kononkova *Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, 143026, Skolkovo, Russia.
Mikhail A Solovyev *Department of Cellular Genomics, Institute of Gene Biology, Russian Academy of Sciences, 119334, Moscow, Russia.
Oxana M OlenkinaLaboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.ORCID 0000-0002-9276-2699
Valentina V NenashevaLaboratory of Molecular Neurogenetics and Innate Immunity, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Elena A MikhalevaLaboratory of Biochemical Genetics of Animals, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Sergey A LavrovLaboratory of Biochemical Genetics of Animals, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Anna Y IvannikovaLaboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.ORCID 0000-0001-7698-7487
Ruslan A SimonovLaboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Anna A FedotovaLaboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia.
Ekaterina E KhrameevaCenter for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology, 143026, Skolkovo, Russia. e.khrameeva@skoltech.ru.ORCID 0000-0001-6188-9139
Sergey V UlianovDepartment of Cellular Genomics, Institute of Gene Biology, Russian Academy of Sciences, 119334, Moscow, Russia.
Sergey V RazinDepartment of Cellular Genomics, Institute of Gene Biology, Russian Academy of Sciences, 119334, Moscow, Russia.
Yuri Y Shevelyov *Laboratory of Analysis of Gene Regulation, Institute of Molecular Genetics of NRC "Kurchatov Institute", 123182, Moscow, Russia. shevelev@img.ras.ru.ORCID 0000-0002-0568-9236

Funding

Russian Foundation for Basic Research (RFBR) 21-34-70051Russian Science Foundation (RSF) 21-64-00001Russian Science Foundation (RSF) 23-14-00049
6 · The paper itself

Abstract

Transport of macromolecules through the nuclear envelope (NE) is mediated by nuclear pore complexes (NPCs) consisting of nucleoporins (Nups). Elys/Mel-28 is the Nup that binds and connects the decondensing chromatin with the reassembled NPCs at the end of mitosis. Whether Elys links chromatin with the NE during interphase is unknown. Here, using DamID-seq, we identified Elys binding sites in Drosophila late embryos and divided them into those associated with nucleoplasmic or with NPC-linked Elys. These Elys binding sites are located within active or inactive chromatin, respectively. Strikingly, Elys knockdown in S2 cells results in peripheral chromatin displacement from the NE, in decondensation of NE-attached chromatin, and in derepression of genes within. It also leads to slightly more compact active chromatin regions. Our findings indicate that NPC-linked Elys, together with the nuclear lamina, anchors peripheral chromatin to the NE, whereas nucleoplasmic Elys decompacts active chromatin.

Indexed as

ChromatinDrosophila ProteinsInterphaseNuclear PoreNuclear Pore Complex ProteinsAnimalsBinding SitesCell NucleusDNA-Binding ProteinsDrosophila melanogasterChromatinDNA-Binding ProteinsDrosophila ProteinsElys protein, DrosophilaNuclear Pore Complex Proteins

Identifiers

PMID38951619
PMCPMC11217421

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.