Evidence map›Paper›PMID 38951607›Full record

ArticleCommunications biology2024

Proton-pumping photoreceptor controls expression of ABC transporter by regulating transcription factor through light.

Jin-Gon Shim, Kimleng Chuon, Ji-Hyun Kim, Sang-Ji Lee, Myung-Chul Song, Shin-Gyu Cho, Chenda Hour, Kwang-Hwan Jung

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jin-Gon ShimDepartment of Life Science, Sogang University, Seoul, South Korea.
Kimleng ChuonDepartment of Life Science, Sogang University, Seoul, South Korea.
Ji-Hyun KimDepartment of Life Science, Sogang University, Seoul, South Korea.ORCID 0009-0001-4610-111X
Sang-Ji LeeDepartment of Life Science, Sogang University, Seoul, South Korea.
Myung-Chul SongDepartment of Life Science, Sogang University, Seoul, South Korea.
Shin-Gyu ChoDepartment of Life Science, Sogang University, Seoul, South Korea.ORCID 0000-0001-9259-7905
Chenda HourDepartment of Life Science, Sogang University, Seoul, South Korea.
Kwang-Hwan JungDepartment of Life Science, Sogang University, Seoul, South Korea. kjung@sogang.ac.kr.ORCID 0000-0002-0828-6539

Funding

National Research Foundation of Korea (NRF) 2018R1A6A1A03024940National Research Foundation of Korea (NRF) NRF-2020R1A2C2008197
6 · The paper itself

Abstract

Light is a significant factor for living organisms with photosystems, like microbial rhodopsin-a retinal protein that functions as an ion pump, channel, and sensory transduction. Gloeobacter violaceus PCC7421, has a proton-pumping rhodopsin gene, the Gloeobacter rhodopsin (GR). The helix-turn-helix family of transcriptional regulators has various motifs, and they regulate gene expression in the presence of various metal ions. Here, we report that active proton outward pumping rhodopsin interacted with the helix-turn-helix transcription regulator and regulated gene expression. This interaction is confirmed using ITC analysis (K

Indexed as

ATP-Binding Cassette TransportersGene Expression Regulation, BacterialLightTranscription FactorsBacterial ProteinsCyanobacteriaProton PumpsRhodopsinRhodopsins, MicrobialATP-Binding Cassette TransportersBacterial ProteinsProton PumpsRhodopsinRhodopsins, MicrobialTranscription Factors

Identifiers

PMID38951607
PMCPMC11217422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.