Evidence map›Paper›PMID 38951569›Full record

ArticleScientific reports2024

Combining single-cell and bulk RNA sequencing, NK cell marker genes reveal a prognostic and immune status in pancreatic ductal adenocarcinoma.

Yonghao Ouyang, Rongxi Shen, Lihua Chu, Chengchao Fu, Wang Hu, Haoxuan Huang, Zhicheng Zhang, Ming Jiang, Xin Chen

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Yonghao OuyangResearch Institute of General Surgery, Jinling Hospital, Nanjing University Medical School, 305 Zhong Shan East Road, Nanjing, 210002, China. 854449245@qq.com.
Rongxi ShenResearch Institute of General Surgery, Jinling Hospital, Nanjing University Medical School, 305 Zhong Shan East Road, Nanjing, 210002, China. shenrongxi1@163.com.
Lihua ChuJinggangshan University, Ji'an, 334000, China.
Chengchao FuNanchang University, 461 Bayi Avenue, Nanchang, 330006, Jiangxi, China.
Wang HuNanchang University, 461 Bayi Avenue, Nanchang, 330006, Jiangxi, China.
Haoxuan HuangNanchang University, 461 Bayi Avenue, Nanchang, 330006, Jiangxi, China.
Zhicheng ZhangNanchang University, 461 Bayi Avenue, Nanchang, 330006, Jiangxi, China.
Ming JiangNanchang University, 461 Bayi Avenue, Nanchang, 330006, Jiangxi, China.
Xin ChenJiangxi University of Chinese Medicine, Nanchang, 330000, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The NK cell is an important component of the tumor microenvironment of pancreatic ductal adenocarcinoma (PDAC), also plays a significant role in PDAC development. This study aimed to explore the relationship between NK cell marker genes and prognosis, immune response of PDAC patients. By scRNA-seq data, we found the proportion of NK cells were significantly downregulated in PDAC and 373 NK cell marker genes were screened out. By TCGA database, we enrolled 7 NK cell marker genes to construct the signature for predicting prognosis in PDAC patients. Cox analysis identified the signature as an independent factor for pancreatic cancer. Subsequently, the predictive power of signature was validated by 6 GEO datasets and had an excellent evaluation. Our analysis of relationship between the signature and patients' immune status revealed that the signature has a strong correlation with immunocyte infiltration, inflammatory reaction, immune checkpoint inhibitors (ICIs) response. The NK cell marker genes are closely related to the prognosis and immune capacity of PDAC patients, and they have potential value as a therapeutic target.

Indexed as

Biomarkers, TumorCarcinoma, Pancreatic DuctalKiller Cells, NaturalPancreatic NeoplasmsSingle-Cell AnalysisAgedFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPrognosisSequence Analysis, RNATumor MicroenvironmentBiomarkers, TumorImmunotherapyNK cell marker genes signaturePancreatic ductal adenocarcinomaPrognosisSingle-cell RNA-sequencing

Identifiers

PMID38951569
PMCPMC11217423

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