Evidence map›Paper›PMID 38951539›Full record

ArticleNature communications2024

Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.

Basudev Maity, Mitsuo Shoji, Fangjia Luo, Takanori Nakane, Satoshi Abe, Shigeki Owada, Jungmin Kang, Kensuke Tono, Rie Tanaka, Thuc Toan Pham and 14 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Capturing irreversible photoswitching inChemical communications (Cambridge, England) · 2026
    Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Basudev MaitySchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan. basudev@bio.titech.ac.jp.ORCID 0000-0001-9347-881X
Mitsuo ShojiCenter for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. mshoji@ccs.tsukuba.ac.jp.ORCID 0000-0001-7465-6326
Fangjia LuoJASRI, 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Takanori NakaneInstitute of Protein Research, Osaka University, Osaka, Japan.ORCID 0000-0003-2697-2767
Satoshi AbeSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Shigeki OwadaJASRI, 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.
Jungmin KangRIKEN SPring-8 Center, Hyogo, 679-5148, Japan.ORCID 0000-0002-3506-6400
Kensuke TonoJASRI, 1-1-1, Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5198, Japan.ORCID 0000-0003-1218-3759
Rie TanakaRIKEN SPring-8 Center, Hyogo, 679-5148, Japan.ORCID 0000-0003-1062-4792
Thuc Toan PhamSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.ORCID 0000-0002-3120-3789
Mariko KojimaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.ORCID 0000-0002-9853-323X
Yuki HishikawaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.ORCID 0000-0002-4545-9195
Junko TanakaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Jiaxin TianSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Misaki NagamaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Taiga SuzukiSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Hiroki NoyaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Yuto NakasujiSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Asuka AsanumaSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
Xinchen YaoSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan.
So IwataRIKEN SPring-8 Center, Hyogo, 679-5148, Japan.
Yasuteru ShigetaCenter for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan.ORCID 0000-0002-3219-6007
Eriko NangoRIKEN SPring-8 Center, Hyogo, 679-5148, Japan. eriko.nango.c4@tohoku.ac.jp.ORCID 0000-0001-9851-7355
Takafumi UenoSchool of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, Japan. tueno@bio.titech.ac.jp.ORCID 0000-0001-9219-0726

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 18H05421MEXT | Japan Society for the Promotion of Science (JSPS) 22H00347
6 · The paper itself

Abstract

Determining short-lived intermediate structures in chemical reactions is challenging. Although ultrafast spectroscopic methods can detect the formation of transient intermediates, real-space structures cannot be determined directly from such studies. Time-resolved serial femtosecond crystallography (TR-SFX) has recently proven to be a powerful method for capturing molecular changes in proteins on femtosecond timescales. However, the methodology has been mostly applied to natural proteins/enzymes and limited to reactions promoted by synthetic molecules due to structure determination challenges. This work demonstrates the applicability of TR-SFX for investigations of chemical reaction mechanisms of synthetic metal complexes. We fix a light-induced CO-releasing Mn(CO)

Indexed as

ManganeseMuramidaseAnimalsCarbon MonoxideChickensCoordination ComplexesCrystallography, X-RayModels, MolecularPorosityTime FactorsCarbon MonoxideCoordination Complexeshen egg lysozymeManganeseMuramidase

Identifiers

PMID38951539
PMCPMC11217357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.