Evidence map›Paper›PMID 38951331›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Probing Baculovirus Vector Gene Essentiality for Foreign Gene Expression Using a CRISPR-Cas9 System.

Madhuja Chakraborty, Jacqueline Powichrowski, Mark R Bruder, Lisa Nielsen, Christopher Sung, Scott J Boegel, Marc G Aucoin

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Madhuja ChakrabortyDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada.
Jacqueline PowichrowskiDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada.
Mark R BruderDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada.
Lisa NielsenDepartment of Biology, Faculty of Science, University of Waterloo, Waterloo, ON, Canada.
Christopher SungDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada.
Scott J BoegelDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada.
Marc G AucoinDepartment of Chemical Engineering, Faculty of Engineering, University of Waterloo, Waterloo, ON, Canada. marc.aucoin@uwaterloo.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The baculovirus expression vector system (BEVS) has now found acceptance in both research laboratories and industry, which can be attributed to many of its key features including the limited host range of the vectors, their non-pathogenicity to humans, and the mammalian-like post-translational modification (PTMs) that can be achieved in insect cells. In fact, this system acts as a middle ground between prokaryotes and higher eukaryotes to produce complex biologics. Still, industrial use of the BEVS lags compared to other platforms. We have postulated that one reason for this has been a lack of genetic tools that can complement the study of baculovirus vectors, while a second reason is the co-production of the baculovirus vector with the desired product. While some genetic enhancements have been made to improve the BEVS as a production platform, the genome remains under-scrutinized. This chapter outlines the methodology for a CRISPR-Cas9-based transfection-infection assay to probe the baculovirus genome for essential/nonessential genes that can potentially maximize foreign gene expression under a promoter of choice.

Indexed as

BaculoviridaeCRISPR-Cas SystemsGenetic VectorsAnimalsGene EditingGene ExpressionGenes, EssentialHumansSf9 CellsTransfectionAcMNPVBaculovirusCRISPR-Cas9Essential genesForeign gene expressionInsect cellsVirus vector

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.