Evidence map›Paper›PMID 38948820›Full record

ArticlebioRxiv : the preprint server for biology2024

Statistical Coupling Analysis Predicts Correlated Motions in Dihydrofolate Reductase.

Thomas L Kalmer, Christine Mae F Ancajas, Cameron I Cohen, Jade M McDaniel, Abiodun S Oyedele, Hannah L Thirman, Allison S Walker

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Thomas L KalmerDepartment of Chemistry, Vanderbilt University Nashville, TN, USA.ORCID 0009-0009-8178-2027
Christine Mae F AncajasDepartment of Chemistry, Vanderbilt University Nashville, TN, USA.ORCID 0000-0001-5697-2202
Cameron I CohenDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-9229-7934
Jade M McDanielDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-0664-8268
Abiodun S OyedeleDepartment of Chemistry, Vanderbilt University Nashville, TN, USA.ORCID 0000-0001-9528-5288
Hannah L ThirmanDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-3735-9995
Allison S WalkerDepartment of Chemistry, Vanderbilt University Nashville, TN, USA.ORCID 0000-0001-5666-7232

Funding

MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Machine learning approaches for the discovery, repurposing, and optimization of natural products with therapeutic potential - Supplement to support grad training of Adrian RussR35GM146987 · NIGMS · VANDERBILT UNIVERSITY · PI Allison Sara Walker · 2022 to 2026
$2.4M
NIGMS NIH HHS R35 GM146987NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

The role of dynamics in enzymatic function is a highly debated topic. Dihydrofolate reductase (DHFR), due to its universality and the depth with which it has been studied, is a model system in this debate. Myriad previous works have identified networks of residues in positions near to and remote from the active site that are involved in dynamics and others that are important for catalysis. For example, specific mutations on the Met20 loop in

Identifiers

PMID38948820
PMCPMC11213021

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.