Evidence map›Paper›PMID 38948754›Full record

ArticlebioRxiv : the preprint server for biology2024

Coaching ribosome biogenesis from the nuclear periphery.

Yinyin Zhuang, Xiangfu Guo, Olga V Razorenova, Christopher E Miles, Wenting Zhao, Xiaoyu Shi

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yinyin ZhuangDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.
Xiangfu GuoSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University; Singapore 637459, Singapore.
Olga V RazorenovaDepartment of Molecular Biology and Biochemistry, University of California, Irvine; Irvine, CA 92697, United States.
Christopher E MilesDepartment of Mathematics, University of California, Irvine; Irvine, CA 92697, United States.ORCID 0000-0001-5494-403X
Wenting ZhaoSchool of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University; Singapore 637459, Singapore.
Xiaoyu ShiDepartment of Developmental and Cell Biology, University of California, Irvine; Irvine, CA 92697, United States.ORCID 0000-0002-9634-2659

Funding

Shared Resource Core: Single Cell AnalysisU54CA217378 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2018 to 2022
$9.7M
Gel-based Optical-isolation Single-Cell 3D Spatial MultiomicsDP2GM150017 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, XIAOYU · 2022 to 2025
$2.6M
Elucidating How Primary Cilia Regulate Hedgehog Signaling by Super-Resolution MicroscopyR00GM126136 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SHI, XIAOYU · 2020 to 2022
$746k
NCI NIH HHS U54 CA217378NIGMS NIH HHS DP2 GM150017NIGMS NIH HHS R00 GM126136
6 · The paper itself

Abstract

Severe invagination of the nuclear envelope is a hallmark of cancers, aging, neurodegeneration, and infections. However, the outcomes of nuclear invagination remain unclear. This work identified a new function of nuclear invagination: regulating ribosome biogenesis. With expansion microscopy, we observed frequent physical contact between nuclear invaginations and nucleoli. Surprisingly, the higher the invagination curvature, the more ribosomal RNA and pre-ribosomes are made in the contacted nucleolus. By growing cells on nanopillars that generate nuclear invaginations with desired curvatures, we can increase and decrease ribosome biogenesis. Based on this causation, we repressed the ribosome levels in breast cancer and progeria cells by growing cells on low-curvature nanopillars, indicating that overactivated ribosome biogenesis can be rescued by reshaping nuclei. Mechanistically, high-curvature nuclear invaginations reduce heterochromatin and enrich nuclear pore complexes, which promote ribosome biogenesis. We anticipate that our findings will serve as a foundation for further studies on nuclear deformation.

Indexed as

Expansion MicroscopyNanopillarsNuclear deformationOrganellar interactionsRibosome biogenesis

Identifiers

PMID38948754
PMCPMC11212990

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.