Evidence map›Paper›PMID 38948742›Full record

ArticlebioRxiv : the preprint server for biology2024

Large-Scale Genome-Wide Optimization and Prediction of the Cre Recombinase System for Precise Genome Manipulation in Mice.

Valerie Erhardt, Elli Hartig, Kristian Lorenzo, Hannah R Megathlin, Basile Tarchini, Vishnu Hosur

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Valerie ErhardtThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.
Elli HartigThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.
Kristian LorenzoThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.
Hannah R MegathlinThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.
Basile TarchiniThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.ORCID 0000-0003-2708-6273
Vishnu HosurThe Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME.ORCID 0000-0003-2084-1723

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Paul Robson · 1985 to 2026
$61.9M
Hair Cell Polarization and Sensory Bundle DevelopmentR01DC015242 · NIDCD · JACKSON LABORATORY · PI Basile Robin Tarchini · 2017 to 2026
$5.4M
Mechanism and Functional Significance of Polarity Reversal in Mechanosensory OrgansR01DC018304 · NIDCD · JACKSON LABORATORY · PI CULLEN, KATHLEEN E, EATOCK, RUTH ANNE · 2020 to 2024
$3.5M
Site-specific Integration of Large (10-100 kb) DNA Constructs into the Mouse Genome and Human Induced Pluripotent Stem Cells Using the Cas9-Bxb1 Integrase ToolboxR01CA265978 · NCI · JACKSON LABORATORY · PI Vishnu Hosur · 2022 to 2026
$3.2M
NCI NIH HHS P30 CA034196NCI NIH HHS R01 CA265978NIDCD NIH HHS R01 DC015242NIDCD NIH HHS R01 DC018304
6 · The paper itself

Abstract

The Cre-Lox recombination system is a powerful tool in mouse genetics, offering spatial-temporal control over gene expression and facilitating the large-scale generation of conditional knockout mice. Its versatility also extends to other research models, such as rats, pigs, and zebrafish. However, the Cre-Lox technology presents a set of challenges that includes high costs, a time-intensive process, and the occurrence of unpredictable recombination events, which can lead to unexpected phenotypic outcomes. To better understand factors affecting recombination, we embarked on a systematic and genome-wide analysis of Cre-mediated recombination in mice. To ensure uniformity and reproducibility, we generated 11 novel strains with conditional alleles at the

Identifiers

PMID38948742
PMCPMC11212873

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.