Evidence map›Paper›PMID 38948139›Full record

ArticlemLife2024

Cofitness network connectivity determines a fuzzy essential zone in open bacterial pangenome.

Pan Zhang, Biliang Zhang, Yuan-Yuan Ji, Jian Jiao, Ziding Zhang, Chang-Fu Tian

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Pan ZhangState Key Laboratory of Plant Environmental Resilience, and College of Biological Sciences China Agricultural University Beijing China.ORCID https://orcid.org/0000-0001-9492-4965
Biliang ZhangMOA Key Laboratory of Soil Microbiology, and Rhizobium Research Center China Agricultural University Beijing China.
Yuan-Yuan JiState Key Laboratory of Plant Environmental Resilience, and College of Biological Sciences China Agricultural University Beijing China.
Jian JiaoState Key Laboratory of Plant Environmental Resilience, and College of Biological Sciences China Agricultural University Beijing China.
Ziding ZhangState Key Laboratory of Livestock and Poultry Biotechnology Breeding, and College of Biological Sciences China Agricultural University Beijing China.
Chang-Fu TianState Key Laboratory of Plant Environmental Resilience, and College of Biological Sciences China Agricultural University Beijing China.ORCID 0000-0002-0479-363X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most in silico evolutionary studies commonly assumed that core genes are essential for cellular function, while accessory genes are dispensable, particularly in nutrient-rich environments. However, this assumption is seldom tested genetically within the pangenome context. In this study, we conducted a robust pangenomic Tn-seq analysis of fitness genes in a nutrient-rich medium for

Indexed as

cofitness networkpangenomeTn‐seq

Identifiers

PMID38948139
PMCPMC11211677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.