Evidence map›Paper›PMID 38948121›Full record

ArticleKDD : proceedings. International Conference on Knowledge Discovery & Data Mining2023

Generalized Matrix Local Low Rank Representation by Random Projection and Submatrix Propagation.

Pengtao Dang, Haiqi Zhu, Tingbo Guo, Changlin Wan, Tong Zhao, Paul Salama, Yijie Wang, Sha Cao, Chi Zhang

Abstract read
In one paragraph

Article in KDD : proceedings. International Conference on Knowledge Discovery & Data Mining, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Pengtao DangPurdue University, Indianapolis, IN, USA.
Haiqi ZhuIndiana University, Bloomington, IN, USA.
Tingbo GuoSchool of Medicine, Indiana University, Indianapolis, IN, USA.
Changlin WanPurdue University, West Lafayette, IN, USA.
Tong ZhaoUber, Inc, Seattle, WA, USA.
Paul SalamaPurdue University, Indianapolis, IN, USA.
Yijie WangIndiana University, Bloomington, IN, USA.
Sha CaoSchool of Medicine, Indiana University, Indianapolis, IN, USA.
Chi ZhangSchool of Medicine, Indiana University, Indianapolis, IN, USA.

Funding

Revealing cell-level gene regulation through integration of single-cell multi-omics measurementsR35GM147241 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Yijie Wang · 2022 to 2026
$1.9M
Development of data driven and AI empowered systems biology to study human diseasesR35GM150971 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Chi Zhang · 2023 to 2026
$1.6M
Construction of cell specific gene co-regulations signatures based on single cell transcriptomics analysisR01GM131399 · NIGMS · SOUTH DAKOTA STATE UNIVERSITY · PI MA, QIN · 2018 to 2021
$1.3M
NIGMS NIH HHS R01 GM131399NIGMS NIH HHS R35 GM147241NIGMS NIH HHS R35 GM150971
6 · The paper itself

Abstract

Matrix low rank approximation is an effective method to reduce or eliminate the statistical redundancy of its components. Compared with the traditional global low rank methods such as singular value decomposition (SVD), local low rank approximation methods are more advantageous to uncover interpretable data structures when clear duality exists between the rows and columns of the matrix. Local low rank approximation is equivalent to low rank submatrix detection. Unfortunately, existing local low rank approximation methods can detect only submatrices of specific mean structure, which may miss a substantial amount of true and interesting patterns. In this work, we develop a novel matrix computational framework called RPSP (Random Probing based submatrix Propagation) that provides an effective solution for the general matrix local low rank representation problem. RPSP detects local low rank patterns that grow from small submatrices of low rank property, which are determined by a random projection approach. RPSP is supported by theories of random projection. Experiments on synthetic data demonstrate that RPSP outperforms all state-of-the-art methods, with the capacity to robustly and correctly identify the low rank matrices when the pattern has a similar mean as the background, background noise is heteroscedastic and multiple patterns present in the data. On real-world datasets, RPSP also demonstrates its effectiveness in identifying interpretable local low rank matrices.

Indexed as

Computing methodologies→Machine learning algorithmsLocal low rank matrixRandomized matrix approximationRandom projectionRepresentation learningSub-matrix detection

Identifiers

PMID38948121
PMCPMC11211019

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.