Evidence map›Paper›PMID 38942804›Full record

ArticleNature communications2024

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19.

Lucile P A Neyton, Ravi K Patel, Aartik Sarma, UCSF COMET Consortium, Andrew Willmore, Sidney C Haller, Kirsten N Kangelaris, Walter L Eckalbar, David J Erle, Matthew F Krummel and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  7. Host-Microbe Multiomic Profiling Predicts Mortality in Sepsis.American journal of respiratory and critical care medicine · 2026
    Article
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  14. Observational
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Lucile P A Neyton *Division of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0003-1273-2228
Ravi K Patel *UCSF CoLabs, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0001-5203-899X
Aartik Sarma *Division of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0002-7508-7345
UCSF COMET Consortium
Andrew WillmoreDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.
Sidney C HallerDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.
Kirsten N KangelarisDivision of Hospital Medicine, University of California, San Francisco, CA, USA.
Walter L EckalbarDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.
David J ErleDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0002-2171-0648
Matthew F KrummelDepartment of Pathology, University of California, San Francisco, CA, USA.ORCID 0000-0001-7915-3533
Carolyn M HendricksonDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0003-4662-2385
Prescott G WoodruffDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.
Charles R LangelierChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID 0000-0002-6708-4646
Carolyn S CalfeeDivision of Pulmonary, Critical Care, Allergy and Sleep Medicine, University of California, San Francisco, CA, USA.
Gabriela K FragiadakisUCSF CoLabs, University of California San Francisco, San Francisco, CA, USA. gabriela.fragiadakis@ucsf.edu.ORCID 0000-0001-9703-2591

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PRESCOTT G WOODRUFF · 2008 to 2026
$41.1M
The role of γδ T cells in fetal and infant immune defense against malariaR01AI093615 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FEENEY, MARGARET E · 2011 to 2025
$9.1M
RESOURCE-BASED CENTER FOR THE ADVANCEMENT OF PRECISION MEDICINE IN RHEUMATOLOGYP30AR070155 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mary C Nakamura · 2016 to 2026
$8.2M
Clinical & Immunological Study of Treatment Withdrawal in E-Ag Negative Hepatitis BR01DK103735 · NIDDK · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI BARON, JODY L, COOPER, STEWART · 2016 to 2025
$7.2M
Precision Medicine in the Acute Respiratory Distress SyndromeR35HL140026 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2018 to 2024
$6.8M
Targeting HIV-specific T cell differentiation programs to enhance post-treatment control of HIVR01AI170239 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Rachel Lena Rutishauser · 2022 to 2026
$4.0M
Sjögren's International Collaborative Clinical Alliance Next Generation Studies (SICCA-NextGen)U01DE028891 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHIBOSKI, CAROLINE HELENE · 2020 to 2024
$4.0M
T cell immunity to CMV in utero and in early childhoodU01AI168390 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARGARET E FEENEY · 2022 to 2026
$3.9M
Immune determinants of progression from Oral Epithelial Dysplasia to Oral Squamous Cell Carcinoma by precision multiplexed imagingR01DE032033 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Matthew Spitzer · 2022 to 2026
$3.8M
Evolution and resolution of ARDS molecular phenotypesK23HL163491 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aartik Sarma · 2023 to 2026
$750k
Transcriptomic signatures of airway inflammation in acute respiratory diseasesF32HL151117 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SARMA, AARTIK · 2020 to 2022
$206k
Genentech (Genentech, Inc.) TSK-020586NHLBI NIH HHS F32 HL151117NHLBI NIH HHS K23 HL163491NHLBI NIH HHS R35 HL140026NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI093615NIAID NIH HHS R01 AI170239NIAID NIH HHS U01 AI168390NIAID NIH HHS U19 AI077439NIAMS NIH HHS P30 AR070155NIDCR NIH HHS R01 DE032033NIDCR NIH HHS U01 DE028891NIDDK NIH HHS R01 DK103735U.S. Department of Health & Human Services | National Institutes of Health (NIH) U19AI077439
6 · The paper itself

Abstract

Dexamethasone is the standard of care for critically ill patients with COVID-19, but the mechanisms by which it decreases mortality and its immunological effects in this setting are not understood. Here we perform bulk and single-cell RNA sequencing of samples from the lower respiratory tract and blood, and assess plasma cytokine profiling to study the effects of dexamethasone on both systemic and pulmonary immune cell compartments. In blood samples, dexamethasone is associated with decreased expression of genes associated with T cell activation, including TNFSFR4 and IL21R. We also identify decreased expression of several immune pathways, including major histocompatibility complex-II signaling, selectin P ligand signaling, and T cell recruitment by intercellular adhesion molecule and integrin activation, suggesting these are potential mechanisms of the therapeutic benefit of steroids in COVID-19. We identify additional compartment- and cell- specific differences in the effect of dexamethasone that are reproducible in publicly available datasets, including steroid-resistant interferon pathway expression in the respiratory tract, which may be additional therapeutic targets. In summary, we demonstrate compartment-specific effects of dexamethasone in critically ill COVID-19 patients, providing mechanistic insights with potential therapeutic relevance. Our results highlight the importance of studying compartmentalized inflammation in critically ill patients.

Indexed as

COVID-19COVID-19 Drug TreatmentCytokinesDexamethasoneLungSARS-CoV-2AgedCritical IllnessFemaleHumansLymphocyte ActivationMaleMiddle AgedSingle-Cell AnalysisT-LymphocytesCytokinesDexamethasone

Identifiers

PMID38942804
PMCPMC11213873

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.