Evidence map›Paper›PMID 38940616›Full record

ArticlemBio2024

Live-cell analysis of IMPDH protein levels during yeast colony growth provides insights into the regulation of GTP synthesis.

Erica L Shand, Kieran Sweeney, Kaitlin E Sundling, Megan N McClean, David A Brow

Abstract read
In one paragraph

Article in mBio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. In thePNAS nexus · 2026
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Erica L ShandDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Kieran SweeneyDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA.
Kaitlin E SundlingDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Megan N McCleanDepartment of Biomedical Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0002-1141-4802
David A BrowDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.ORCID 0000-0002-8028-014X

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
Elucidating the network design principles of biological signal processingR35GM128873 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Megan N McClean · 2018 to 2026
$4.0M
RNA-based mechanisms in nuclear steps of gene expressionR35GM118075 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROW, DAVID A · 2016 to 2025
$3.1M
Mechanism and targets of Sen1-dependent RNA polymerase II terminationR01GM082956 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROW, DAVID A · 2010 to 2013
$1.1M
HHS | National Institutes of Health (NIH) R01GM082956HHS | National Institutes of Health (NIH) R35GM118075HHS | National Institutes of Health (NIH) R35GM128873HHS | National Institutes of Health (NIH) T32GM08349HHS | National Institutes of Health (NIH) T32HG002760National Science Foundation (NSF) GRFPNHGRI NIH HHS T32 HG002760NIGMS NIH HHS R01 GM082956NIGMS NIH HHS R35 GM118075NIGMS NIH HHS R35 GM128873NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

The purine nucleotides ATP and GTP are made from the common precursor inosine monophosphate (IMP). Maintaining the correct balance of these nucleotides for optimal cell growth is controlled in part by the enzyme IMP dehydrogenase (IMPDH), which catalyzes the first dedicated step of GTP biosynthesis. The regulation of IMPDH mRNA and protein levels in the yeast IMPORTANCE: This study used live-cell microscopy to track changes in the level of a key enzyme in GTP nucleotide biosynthesis, inosine monophosphate dehydrogenase (IMPDH), during growth of a brewers yeast colony over 2 days in a microfluidic device. The results show that feedback regulation via transcription attenuation allows cells to adapt to nutrient limitation in the crowded environs of a yeast colony. They also identify a novel mode of regulation of IMPDH level that is not driven by guanine nucleotide availability.

Indexed as

Gene Expression Regulation, FungalGuanosine TriphosphateIMP DehydrogenaseSaccharomyces cerevisiaeMycophenolic AcidSaccharomyces cerevisiae ProteinsGuanosine TriphosphateIMP DehydrogenaseMycophenolic AcidSaccharomyces cerevisiae ProteinsGTP biosynthesismicrofluidicsmycophenolic acidnucleotide metabolismtranscription attenuation

Identifiers

PMID38940616
PMCPMC11323793

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.