Evidence map›Paper›PMID 38940524›Full record

ArticlemSystems2024

Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie.

Elizabeth R Denison, Brittany N Zepernick, R Michael L McKay, Steven W Wilhelm

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Elizabeth R DenisonDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.ORCID 0000-0003-3320-8847
Brittany N ZepernickDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.ORCID 0000-0003-3121-1225
R Michael L McKayGreat Lakes Institute for Environmental Research, University of Windsor, Windsor, Ontario, Canada.ORCID 0000-0003-2723-5371
Steven W WilhelmDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA.ORCID 0000-0001-6283-8077

Funding

The synergistic effects of climate and anthropogenic drivers on toxic cyanobacterial bloomsP01ES028939 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Gregory James Dick, David Joseph Kennedy · 2018 to 2026
$3.7M
Canadian Government | Natural Sciences and Engineering Research Council of Canada (NSERC) RGPIN-2019-03943HHS | NIH | National Institute of Environmental Health Sciences (NIEHS) 1P01ES02328939-01National Science Foundation (NSF) OCE-1840715NIEHS NIH HHS P01 ES028939Simons Foundation (SF) 735077
6 · The paper itself

Abstract

Winter is a relatively under-studied season in freshwater ecology. The paucity of wintertime surveys has led to a lack of knowledge regarding microbial community activity during the winter in Lake Erie, a North American Great Lake. Viruses shape microbial communities and regulate biogeochemical cycles by acting as top-down controls, yet very few efforts have been made to examine active virus populations during the winter in Lake Erie. Furthermore, climate change-driven declines in seasonal ice cover have been shown to influence microbial community structure, but no studies have compared viral community activity between different ice cover conditions. We surveyed surface water metatranscriptomes for viral hallmark genes as a proxy for active virus populations and compared activity metrics between ice-covered and ice-free conditions from two sampled winters. Transcriptionally active viral communities were detected in both winters, spanning diverse phylogenetic clades of putative bacteriophage (

Indexed as

Ice CoverLakesSeasonsMicrobiotaPhylogenyTranscriptomeViromeVirusesclimate changediatom bloommetatranscriptomicsviral diversitywinter limnology

Identifiers

PMID38940524
PMCPMC11264689

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.