Evidence map›Paper›PMID 38940520›Full record

ArticlemSystems2024

Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.

Anna N Rasmussen, Bradley B Tolar, John R Bargar, Kristin Boye, Christopher A Francis

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anna N RasmussenDepartment of Earth System Science, Stanford University, Stanford, California, USA.ORCID 0000-0002-0031-2835
Bradley B TolarDepartment of Earth System Science, Stanford University, Stanford, California, USA.ORCID 0000-0003-0493-1470
John R BargarEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.
Kristin BoyeSLAC National Accelerator Laboratory, Menlo Park, California, USA.
Christopher A FrancisDepartment of Earth System Science, Stanford University, Stanford, California, USA.ORCID 0000-0001-7557-631X

Funding

U.S. Department of Energy (DOE) DE- AC02-76SF00515
6 · The paper itself

Abstract

We use metagenome-assembled genomes (MAGs) to understand single-carbon (C1) compound-cycling-particularly methane-cycling-microorganisms in montane riparian floodplain sediments. We generated 1,233 MAGs (>50% completeness and <10% contamination) from 50- to 150-cm depth below the sediment surface capturing the transition between oxic, unsaturated sediments and anoxic, saturated sediments in the Slate River (SR) floodplain (Crested Butte, CO, USA). We recovered genomes of putative methanogens, methanotrophs, and methylotrophs (

Indexed as

Geologic SedimentsMetagenomeMethaneRiversArchaeaBacteriaGenome, ArchaealGenome, BacterialPhylogenyMethanecarbonfloodplainmetagenome-assembled genomesmethanesubsurface

Identifiers

PMID38940520
PMCPMC11264602

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.