Evidence map›Paper›PMID 38940470›Full record

ArticleDevelopment (Cambridge, England)2024

SoxB1 transcription factors are essential for initiating and maintaining neural plate border gene expression.

Elizabeth N Schock, Joshua R York, Austin P Li, Ashlyn Y Tu, Carole LaBonne

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Elizabeth N SchockDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0002-3970-799X
Joshua R YorkDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0001-8853-4880
Austin P LiDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Ashlyn Y TuDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.
Carole LaBonneDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.ORCID 0000-0001-6001-7179

Funding

Neural Crest Ontogeny and the Control of Stem Cell AttributesR01GM116538 · NIGMS · NORTHWESTERN UNIVERSITY · PI LABONNE, CAROLE · 2015 to 2018
$1.2M
The Role of SoxE Transcription Factors in Neural Crest Cell SpecializationR00DE031825 · NIDCR · UNIVERSITY OF KENTUCKY · PI Elizabeth (Betsy) Schock · 2024 to 2026
$747k
Identifying Sox family transcription factor partners and targets essential for neural crest formationF32DE029113 · NIDCR · NORTHWESTERN UNIVERSITY · PI SCHOCK, ELIZABETH (BETSY) · 2019 to 2021
$200k
The Role of SoxE Transcription Factors in Neural Crest Cell SpecializationK99DE031825 · NIDCR · NORTHWESTERN UNIVERSITY · PI SCHOCK, ELIZABETH (BETSY) · 2023 to 2024
$194k
SoxE regulation of Neural Crest DevelopmentF31DE021922 · NIDCR · NORTHWESTERN UNIVERSITY · PI NORDIN, KARA M · 2011 to 2014
$142k
National Science Foundation 1764421NIDCR NIH HHS 5F32DE029113NIDCR NIH HHS F31 DE021922NIDCR NIH HHS F32 DE029113NIDCR NIH HHS K99 DE031825NIDCR NIH HHS R00 DE031825NIGMS NIH HHS R01 GM116538NIGMS NIH HHS R01GM116538NIH HHS R01GM116538NSF 1764421Simons Foundation 597491-RWC
6 · The paper itself

Abstract

SoxB1 transcription factors (Sox2/3) are well known for their role in early neural fate specification in the embryo, but little is known about functional roles for SoxB1 factors in non-neural ectodermal cell types, such as the neural plate border (NPB). Using Xenopus laevis, we set out to determine whether SoxB1 transcription factors have a regulatory function in NPB formation. Here, we show that SoxB1 factors are necessary for NPB formation, and that prolonged SoxB1 factor activity blocks the transition from a NPB to a neural crest state. Using ChIP-seq, we demonstrate that Sox3 is enriched upstream of NPB genes in early NPB cells and in blastula stem cells. Depletion of SoxB1 factors in blastula stem cells results in downregulation of NPB genes. Finally, we identify Pou5f3 factors as potential Sox3 partners in regulating the formation of the NPB and show that their combined activity is needed for normal NPB gene expression. Together, these data identify a role for SoxB1 factors in the establishment and maintenance of the NPB, in part through partnership with Pou5f3 factors.

Indexed as

Gene Expression Regulation, DevelopmentalNeural CrestNeural PlateSOXB1 Transcription FactorsXenopus laevisXenopus ProteinsAnimalsBlastulaEmbryo, NonmammalianSox3 protein, XenopusSOXB1 Transcription FactorsXenopus ProteinsNeural crestNeural plate borderPou5fSoxB1Xenopus

Identifiers

PMID38940470
PMCPMC11369808

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.