Evidence map›Paper›PMID 38937744›Full record

ArticleBMC medical informatics and decision making2024

Addressing label noise for electronic health records: insights from computer vision for tabular data.

Jenny Yang, Hagen Triendl, Andrew A S Soltan, Mangal Prakash, David A Clifton

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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  6. Article
  7. Deep learning with noisy labels in medical prediction problems: a scoping review.Journal of the American Medical Informatics Association : JAMIA · 2024
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jenny YangInstitute of Biomedical Engineering, Dept. Engineering Science, University of Oxford, Oxford, England. jenny.yang@eng.ox.ac.uk.
Hagen TriendlExscientia, Oxford, England.
Andrew A S SoltanInstitute of Biomedical Engineering, Dept. Engineering Science, University of Oxford, Oxford, England.
Mangal Prakash *Work done at Exscientia, Currently Independent Researcher, Reading, United Kingdom.
David A Clifton *Institute of Biomedical Engineering, Dept. Engineering Science, University of Oxford, Oxford, England.

Funding

Horizon 2020 Framework Programme 955681Wellcome TrustWellcome Trust 0009350
6 · The paper itself

Abstract

The analysis of extensive electronic health records (EHR) datasets often calls for automated solutions, with machine learning (ML) techniques, including deep learning (DL), taking a lead role. One common task involves categorizing EHR data into predefined groups. However, the vulnerability of EHRs to noise and errors stemming from data collection processes, as well as potential human labeling errors, poses a significant risk. This risk is particularly prominent during the training of DL models, where the possibility of overfitting to noisy labels can have serious repercussions in healthcare. Despite the well-documented existence of label noise in EHR data, few studies have tackled this challenge within the EHR domain. Our work addresses this gap by adapting computer vision (CV) algorithms to mitigate the impact of label noise in DL models trained on EHR data. Notably, it remains uncertain whether CV methods, when applied to the EHR domain, will prove effective, given the substantial divergence between the two domains. We present empirical evidence demonstrating that these methods, whether used individually or in combination, can substantially enhance model performance when applied to EHR data, especially in the presence of noisy/incorrect labels. We validate our methods and underscore their practical utility in real-world EHR data, specifically in the context of COVID-19 diagnosis. Our study highlights the effectiveness of CV methods in the EHR domain, making a valuable contribution to the advancement of healthcare analytics and research.

Indexed as

Electronic Health RecordsCOVID-19Deep LearningHumansMachine LearningElectronic health recordsMachine learningNoisy labels

Identifiers

PMID38937744
PMCPMC11212446

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.