Evidence map›Paper›PMID 38937141›Full record

ArticleArthritis & rheumatology (Hoboken, N.J.)2024

Enrichment of Rare Variants of Hemophagocytic Lymphohistiocytosis Genes in Systemic Juvenile Idiopathic Arthritis.

Mariana Correia Marques, Danielle Rubin, Emily G Shuldiner, Mallika Datta, Elizabeth Schmitz, Gustavo Gutierrez Cruz, Andrew Patt, Elizabeth Bennett, Alexei Grom, Dirk Foell and 13 more

Abstract read
In one paragraph

Article in Arthritis & rheumatology (Hoboken, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Mariana Correia MarquesNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.ORCID https://orcid.org/0000-0002-1195-1595
Danielle RubinNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Emily G ShuldinerNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Mallika DattaNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Elizabeth SchmitzNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Gustavo Gutierrez CruzNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Andrew PattNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Elizabeth BennettNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Alexei GromCincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Dirk FoellUniversity Hospital Muenster, Muenster, Germany.ORCID https://orcid.org/0000-0002-1946-3916
Marco GattornoIRCCS Istituto G. Gaslini, Genoa, Italy.ORCID https://orcid.org/0000-0003-0704-1916
John BohnsackUniversity of Utah Eccles School of Medicine, Salt Lake City.
Rae S M YeungUniversity of Toronto, Toronto, Ontario, Canada.
Sampath PrahaladEmory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, Georgia.ORCID https://orcid.org/0000-0003-3489-1756
Elizabeth MellinsStanford University, Stanford, California.
Jordi AntonHospital Sant Joan de Déu, Universitat de Barcelona, Barcelona, Spain.
Claudio A LenSão Paulo Federal University, São Paulo, Brazil.
Sheila OliveiraFederal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Patricia WooUniversity College London, London, United Kingdom.
Seza OzenHacettepe University, Ankara, Turkey.ORCID https://orcid.org/0000-0003-2883-7868
Zuoming DengNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.
Michael J OmbrelloNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.ORCID https://orcid.org/0000-0003-3322-4089
INCHARGE Consortium

Funding

Genetic Analysis of Complex Inflammatory DisordersZIAHG200371 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI KASTNER, DANIEL · 2011 to 2024
$18.8M
Genetics and pathophysiology of systemic juvenile idiopathic arthritis and other complex autoinflammatory diseasesZIAAR041198 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI OMBRELLO, MICHAEL · 2014 to 2025
$14.4M
HHS HHSN268201700001IHHS HHSN268201700002IHHS HHSN268201700003IHHS HHSN268201700004IHHS HHSN268201700005IIntramural NIH HHS ZIA AR041198Intramural Research Program of the National Institute of Arthritis and Musculoskeletal and Skin DiseaseNHLBI NIH HHS HHSN268201700001CNHLBI NIH HHS HHSN268201700001INHLBI NIH HHS HHSN268201700002CNHLBI NIH HHS HHSN268201700002INHLBI NIH HHS HHSN268201700003CNHLBI NIH HHS HHSN268201700003INHLBI NIH HHS HHSN268201700004CNHLBI NIH HHS HHSN268201700004INHLBI NIH HHS HHSN268201700005CNHLBI NIH HHS HHSN268201700005INIH HHS Z01-AR-041198The Marcus Foundation Inc.Tobacco-Related Disease Research Program predoctoral fellowship T33DT6556
6 · The paper itself

Abstract

objectiveOur objective was to evaluate whether there is an enrichment of rare variants in familial hemophagocytic lymphohistiocytosis (HLH)-associated genes among patients with systemic juvenile idiopathic arthritis (sJIA) with or without macrophage activation syndrome (MAS).

methodsTargeted sequencing of HLH genes (LYST, PRF1, RAB27A, STX11, STXBP2, UNC13D) was performed in patients with sJIA from an established cohort. Sequence data from control participants were obtained in silico (database of Genotypes and Phenotypes: phs000280.v8.p2). Rare variant association testing (RVT) was performed with sequence kernel association test package. Significance was defined as P < 0.05 after 100,000 permutations.

resultsSequencing data from 524 sJIA cases were jointly called and harmonized with exome-derived target data from 3,000 controls. Quality control operations produced a set of 480 cases and 2,924 ancestrally matched control participants. RVT of cases and controls revealed a significant association with rare protein-altering variants (minor allele frequency [MAF] < 0.01) of STXBP2 (P = 0.020) and ultrarare variants (MAF < 0.001) of STXBP2 (P = 0.006) and UNC13D (P = 0.046). A subanalysis of 32 cases with known MAS and 90 without revealed a significant difference in the distribution of rare UNC13D variants (P = 0.0047) between the groups. Additionally, patients with sJIA more often carried two or more HLH variants than did controls (P = 0.007), driven largely by digenic combinations involving LYST.

conclusionWe identified an enrichment of rare HLH variants in patients with sJIA compared with controls, driven by STXBP2 and UNC13D. Biallelic variation in HLH genes was associated with sJIA, driven by LYST. Only UNC13D displayed enrichment in patients with MAS. This suggests that HLH variants may contribute to the pathophysiology of sJIA, even without MAS.

Indexed as

Arthritis, JuvenileLymphohistiocytosis, HemophagocyticMacrophage Activation SyndromeMembrane ProteinsMunc18 ProteinsPerforinQa-SNARE ProteinsAdolescentCase-Control StudiesChildChild, PreschoolFemaleGenetic Predisposition to DiseaseGenetic VariationHumansLysosomal Membrane ProteinsLysosomal Membrane ProteinsLYST protein, humanMembrane ProteinsMunc18 ProteinsPerforinPRF1 protein, humanQa-SNARE ProteinsRAB27A protein, humanrab27 GTP-Binding Proteinsrab GTP-Binding ProteinsR-SNARE ProteinsSTX11 protein, humanSTXBP2 protein, humanUNC13D protein, humanVesicular Transport Proteins

Identifiers

PMID38937141
PMCPMC12341541

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.