Evidence map›Paper›PMID 38936509›Full record

ArticleMolecules and cells2024

Guide for generating single-cell-derived knockout clones in mammalian cell lines using the CRISPR/Cas9 system.

Taeyeon Hong, Seung-Min Bae, Gwonhwa Song, Whasun Lim

Abstract readLetter
In one paragraph

Article in Molecules and cells, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Taeyeon HongDepartment of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Seung-Min BaeDepartment of MetaBioHealth, Sungkyunkwan University, Suwon 16419, Republic of Korea.
Gwonhwa SongDepartment of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Republic of Korea. Electronic address: ghsong@korea.ac.kr.
Whasun LimDepartment of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, Republic of Korea; Department of MetaBioHealth, Sungkyunkwan University, Suwon 16419, Republic of Korea. Electronic address: wlim@skku.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome editing has developed rapidly in various research fields for targeted genome modifications in many organisms, including cells, plants, viruses, and animals. The clustered regularly interspaced short palindromic repeats-associated protein 9 system stands as a potent tool in gene editing for generating cells and animal models with high precision. The clinical potential of clustered regularly interspaced short palindromic repeats-associated protein 9 has been extensively reported, with applications in genetic disease correction, inhibition of viral replication, and personalized or targeted therapeutics for various cancers. In this study, we provide a guide on single-guide RNA design, cloning single-guide RNA into plasmid vectors, single-cell isolation via transfection, and identification of knockout clones using next-generation sequencing. In addition, by providing the results of insertion into mammalian cell lines through next-generation sequencing, we offer useful information to those conducting research on human and animal cell lines.

Indexed as

CRISPR-Cas SystemsGene EditingGene Knockout TechniquesRNA, Guide, CRISPR-Cas SystemsAnimalsCell LineHEK293 CellsHigh-Throughput Nucleotide SequencingHumansSingle-Cell AnalysisRNA, Guide, CRISPR-Cas SystemsClustered regularly interspaced short palindromic repeats-associated protein 9Culture systemGenome editingSingle-guide RNA

Identifiers

PMID38936509
PMCPMC11292505

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.