Evidence map›Paper›PMID 38934646›Full record

ArticlemSystems2024

Average nucleotide identity-based

Vishnu Raghuram, Robert A Petit, Zach Karol, Rohan Mehta, Daniel B Weissman, Timothy D Read

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Linkage of nucleotide and functional diversity varies across gut bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Metabolic cross-talk promotes persistence ofbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Transition ofbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. A complete circular genome of ΦX174 hostMicrobiology resource announcements · 2025
    Article
  12. Frontiers in veterinary science · 2025
    Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Vishnu RaghuramMicrobiology and Molecular Genetics Program, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, USA.ORCID 0000-0002-7435-6435
Robert A PetitDivision of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA.
Zach KarolDepartment of Physics, Emory University, Atlanta, Georgia, USA.
Rohan MehtaDepartment of Physics, Emory University, Atlanta, Georgia, USA.
Daniel B WeissmanDepartment of Physics, Emory University, Atlanta, Georgia, USA.
Timothy D ReadDivision of Infectious Diseases, Department of Medicine, Emory University, Atlanta, Georgia, USA.ORCID 0000-0001-8966-9680

Funding

Genomics of S. Aureus Colonization after Initial and Recurrent Skin Infections and the Impact of AntibioticsR01AI139188 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI DAVID, MICHAEL ZDENEK · 2018 to 2022
$3.8M
Staphylococcus aureus SPREAD (S. aureus Study of Prevalence Resistance and Environmental Dissemination)R01AI158452 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Michael Zdenek David · 2022 to 2026
$3.5M
Infectious Diseases Across Scales Training ProgramT32AI138952 · NIAID · EMORY UNIVERSITY · PI Jacobus de Roode · 2019 to 2026
$1.8M
Alfred P. Sloan Foundation (APSF) FG-2021-16667HHS | National Institutes of Health (NIH) AI138952HHS | National Institutes of Health (NIH) AI139188HHS | National Institutes of Health (NIH) AI158452National Science Foundation (NSF) 2146260NIAID NIH HHS R01 AI139188NIAID NIH HHS R01 AI158452NIAID NIH HHS T32 AI138952Simons Foundation (SF) 508600
6 · The paper itself

Abstract

IMPORTANCE: We analyzed the genomic diversity of

Indexed as

Genome, BacterialStaphylococcus aureusGenes, BacterialHumansPhylogenySpecies SpecificityStaphylococcal InfectionsWhole Genome Sequencingantimicrobial resistancegenomicspangenomeStaphylococcus aureus

Identifiers

PMID38934646
PMCPMC11265343

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.