Evidence map›Paper›PMID 38934645›Full record

ArticlemSystems2024

Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake.

Raquel Liébana, Tomeu Viver, María Dolores Ramos-Barbero, Esteban Bustos-Caparros, Mercedes Urdiain, Cristina López, Mohammad Ali Amoozegar, Josefa Antón, Ramon Rossello-Mora

Abstract read
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Raquel LiébanaMarine Microbiology Group, Department of Animal and Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Esporles, Spain.ORCID 0000-0002-2196-5632
Tomeu ViverMarine Microbiology Group, Department of Animal and Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Esporles, Spain.ORCID 0000-0001-8868-9292
María Dolores Ramos-BarberoDepartment of Physiology, Genetics and Microbiology, University of Alicante, Alicante, Spain.ORCID 0000-0001-7893-8320
Esteban Bustos-CaparrosMarine Microbiology Group, Department of Animal and Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Esporles, Spain.ORCID 0000-0002-9489-4441
Mercedes UrdiainMarine Microbiology Group, Department of Animal and Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Esporles, Spain.ORCID 0000-0001-6834-0237
Cristina LópezDepartment of Physiology, Genetics and Microbiology, University of Alicante, Alicante, Spain.
Mohammad Ali AmoozegarExtremophiles Laboratory, Department of Microbiology, School of Biology and Center of Excellence in Phylogeny of Living Organisms, College of Science, University of Tehran, Tehran, Iran.
Josefa AntónDepartment of Physiology, Genetics and Microbiology, University of Alicante, Alicante, Spain.ORCID 0000-0002-5823-493X
Ramon Rossello-MoraMarine Microbiology Group, Department of Animal and Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, UIB-CSIC), Esporles, Spain.ORCID 0000-0001-8253-3107

Funding

Ministerio de Ciencia e Innovación (MCIN) PGC2018-096956-B-C41, PGC2018-096956-B-C43, RTC-2017-6405-1, PID2021-126114NB-C42, PID2021-126114NB-C44
6 · The paper itself

Abstract

Hypersaline ecosystems display taxonomically similar assemblages with low diversities and highly dense accompanying viromes. The ecological implications of viral infection on natural microbial populations remain poorly understood, especially at finer scales of diversity. Here, we sought to investigate the influence of changes in environmental physicochemical conditions and viral predation pressure by autochthonous and allochthonous viruses on host dynamics. For this purpose, we transplanted two microbiomes coming from distant hypersaline systems (solar salterns of Es Trenc in Spain and the thalassohaline lake of Aran-Bidgol lake in Iran), by exchanging the cellular fractions with the sterile-filtered accompanying brines with and without the free extracellular virus fraction. The midterm exposure (1 month) of the microbiomes to the new conditions showed that at the supraspecific taxonomic range, the assemblies from the solar saltern brine more strongly resisted the environmental changes and viral predation than that of the lake. The metagenome-assembled genomes (MAGs) analysis revealed an intraspecific transition at the ecotype level, mainly driven by changes in viral predation pressure, by both autochthonous and allochthonous viruses. IMPORTANCE: Viruses greatly influence succession and diversification of their hosts, yet the effects of viral infection on the ecological dynamics of natural microbial populations remain poorly understood, especially at finer scales of diversity. By manipulating the viral predation pressure by autochthonous and allochthonous viruses, we uncovered potential phage-host interaction, and their important role in structuring the prokaryote community at an ecotype level.

Indexed as

LakesMicrobiotaBacteriaHumansIranMetagenomeSalinitySaltsSpainbrineSaltscommunity assemblycommunity transplantcomparative metagenomicshyperhalophilic microbiomesmetagenome-assembled genomesmicrodiversityviral predation pressure

Identifiers

PMID38934645
PMCPMC11324034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.