Evidence map›Paper›PMID 38934546›Full record

ArticlemSystems2024

Pangenome comparison of

Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda-Ferre, Allison C Ea, MacKenzie Bryant, Jocelyn A Young, Hannah C Carrow and 6 more

Abstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Comparative genomic analysis ofMicrobiology spectrum · 2026
    Article
  2. Clinical Significance ofMicroorganisms · 2026
    Article
  3. Article
  4. Article
  5. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Renee E OlesDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0001-5945-0215
Marvic Carrillo TerrazasDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0002-8830-5161
Luke R LoomisDepartment of Pathology, University of California, San Diego, California, USA.
Chia-Yun HsuDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0002-5283-1020
Caitlin TribelhornDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.
Pedro Belda-FerreDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.ORCID 0000-0001-6532-1161
Allison C EaDepartment of Pathology, University of California, San Diego, California, USA.
MacKenzie BryantDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.ORCID 0000-0003-0749-2995
Jocelyn A YoungDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.ORCID 0000-0002-9364-1928
Hannah C CarrowDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0003-0463-0811
William J SandbornDivision of Gastroenterology, University of California, San Diego, California, USA.
Parambir S DulaiDivision of Gastroenterology, University of California, San Diego, California, USA.
Mamata SivagnanamDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.ORCID 0000-0002-3643-1326
David PrideDepartment of Pathology, University of California, San Diego, California, USA.
Rob KnightDepartment of Pediatrics, School of Medicine, University of California, San Diego, California, USA.ORCID 0000-0002-0975-9019
Hiutung ChuDepartment of Pathology, University of California, San Diego, California, USA.ORCID 0000-0001-7489-0446

Funding

San Diego Digestive Diseases Research CenterP30DK120515 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2019 to 2026
$10.8M
Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
Rheumatic Diseases Research Training GrantT32AR064194 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GARY S FIRESTEIN, Monica Guma · 2013 to 2026
$3.8M
Bacterial adaptions in host-microbe interactions.R01AI167860 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Hiutung Chu · 2022 to 2026
$2.8M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
HHS | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) T32AR064194NIAID NIH HHS R01 AI167860NIAMS NIH HHS T32 AR064194NIDDK NIH HHS P30 DK120515NIDDK NIH HHS T32 DK007202NIH HHS S10 OD026929
6 · The paper itself

Abstract

IMPORTANCE: Understanding the distinct functions of microbial species in the gut microbiome is crucial for deciphering their impact on human health. Classifying division II strains as

Indexed as

Bacteroides fragilisGenetic VariationGenome, BacterialBacteroides InfectionsDrug Resistance, BacterialGastrointestinal MicrobiomeHumansPhylogenyWhole Genome SequencingBacteroidescommensal bacteriagenomic diversityniche adaptationpangenome

Identifiers

PMID38934546
PMCPMC11265264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.