Evidence map›Paper›PMID 38932271›Full record

ArticleViruses2024

Human Rotaviruses of Multiple Genotypes Acquire Conserved VP4 Mutations during Serial Passage.

Maximilian H Carter, Jennifer Gribble, Julia R Diller, Mark R Denison, Sara A Mirza, James D Chappell, Natasha B Halasa, Kristen M Ogden

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maximilian H CarterDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Jennifer GribbleDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Julia R DillerDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Mark R DenisonDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Sara A MirzaCenters for Disease Control and Prevention, Atlanta, GA 30329, USA.
James D ChappellDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Natasha B HalasaDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.
Kristen M OgdenDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN 37232, USA.ORCID 0000-0002-2670-4335

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
Enhanced Surveillance for New Vaccine Preventable DiseasesU01IP001063 · IP · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HALASA, NATASHA BASSAM · 2016 to 2020
$6.3M
NEW VACCINE SURVEILLANCE NETWORK -Patient Protection-ACAU01IP000464 · IP · VANDERBILT UNIVERSITY · PI HALASA, NATASHA BASSAM · 2011 to 2015
$3.5M
Rotavirus Outer Capsid Functions in NeutralizationR21AI146698 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OGDEN, KRISTEN M · 2019 to 2020
$468k
ACL HHS U01IP000464CDC HHS 1U01 IP000464-05S2CDC HHS 1U01 IP00163-01CDC HHS 3U01 IP000464-05S1CDC HHS 3U01 IP001063-01S1CDC HHS 5U01 IP000464-05NCIRD CDC HHS U01 IP000464NCIRD CDC HHS U01 IP001063NIAID NIH HHS R21 AI146698NIDDK NIH HHS P30 DK058404NIH HHS 5R21AI146698-02
6 · The paper itself

Abstract

Human rotaviruses exhibit limited tropism and replicate poorly in most cell lines. Attachment protein VP4 is a key rotavirus tropism determinant. Previous studies in which human rotaviruses were adapted to cultured cells identified mutations in VP4. However, most such studies were conducted using only a single human rotavirus genotype. In the current study, we serially passaged 50 human rotavirus clinical specimens representing five of the genotypes most frequently associated with severe human disease, each in triplicate, three to five times in primary monkey kidney cells then ten times in the MA104 monkey kidney cell line. From 13 of the 50 specimens, we obtained 25 rotavirus antigen-positive lineages representing all five genotypes, which tended to replicate more efficiently in MA104 cells at late versus early passage. We used Illumina next-generation sequencing and analysis to identify variants that arose during passage. In VP4, variants encoded 28 mutations that were conserved for all P[8] rotaviruses and 12 mutations that were conserved for all five genotypes. These findings suggest there may be a conserved mechanism of human rotavirus adaptation to MA104 cells. In the future, such a conserved adaptation mechanism could be exploited to study human rotavirus biology or efficiently manufacture vaccines.

Indexed as

Capsid ProteinsRotavirusRotavirus InfectionsSerial PassageAnimalsCell LineGenotypeHigh-Throughput Nucleotide SequencingHumansMutationViral TropismVirus ReplicationCapsid ProteinsVP4 protein, Rotavirusculture adaptationgenotyperotavirusserial passageVP4

Identifiers

PMID38932271
PMCPMC11209247

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.