Evidence map›Paper›PMID 38932154›Full record

ArticleViruses2024

A 44-Nucleotide Region in the Chikungunya Virus 3' UTR Dictates Viral Fitness in Disparate Host Cells.

Stephanie E Ander, Kathryn S Carpentier, Wes Sanders, Cormac J Lucas, Austin J Jolly, Cydney N Johnson, David W Hawman, Mark T Heise, Nathaniel J Moorman, Thomas E Morrison

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Stephanie E AnderDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Kathryn S CarpentierDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Wes SandersDepartment of Microbiology & Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Cormac J LucasDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Austin J JollyDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.ORCID 0000-0001-6458-4648
Cydney N JohnsonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.
David W HawmanDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.ORCID 0000-0001-8233-8176
Mark T HeiseDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Nathaniel J MoormanDepartment of Microbiology & Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Thomas E MorrisonDepartment of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, CO 80045, USA.ORCID 0000-0002-1811-2938

Funding

Clearance of Blood-Borne ArbovirusesR01AI148144 · NIAID · UNIVERSITY OF COLORADO DENVER · PI MORRISON, THOMAS E · 2020 to 2025
$2.3M
Defining Functional RNA Structures in an Arthritic Alphavirus GenomeR21AI138056 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HEISE, MARK T, MOORMAN, NATHANIEL J · 2018 to 2019
$424k
Viral and Host Determinants of Chikungunya Virus DisseminationF32AI140567 · NIAID · UNIVERSITY OF COLORADO DENVER · PI CARPENTIER, KATHRYN SEMMENS · 2018 to 2021
$170k
Defining the Molecular Determinants of Encephalitic Alphavirus ViremiaF32AI161866 · NIAID · UNIVERSITY OF COLORADO DENVER · PI ANDER, STEPHANIE · 2022 to 2023
$139k
NIAID NIH HHS F32 AI140567NIAID NIH HHS F32 AI161866NIAID NIH HHS R01 AI148144NIAID NIH HHS R01AI148144NIAID NIH HHS R21 AI138056
6 · The paper itself

Abstract

We previously reported that deletion of a 44-nucleotide element in the 3' untranslated region (UTR) of the Chikungunya virus (CHIKV) genome enhances the virulence of CHIKV infection in mice. Here, we find that while this 44-nucleotide deletion enhances CHIKV fitness in murine embryonic fibroblasts in a manner independent of the type I interferon response, the same mutation decreases viral fitness in C6/36 mosquito cells. Further, the fitness advantage conferred by the UTR deletion in mammalian cells is maintained in vivo in a mouse model of CHIKV dissemination. Finally, SHAPE-MaP analysis of the CHIKV 3' UTR revealed this 44-nucleotide element forms a distinctive two-stem-loop structure that is ablated in the mutant 3' UTR without altering additional 3' UTR RNA secondary structures.

Indexed as

3' Untranslated RegionsChikungunya FeverChikungunya virusVirus ReplicationAnimalsCell LineDisease Models, AnimalFibroblastsGenetic FitnessHumansMiceNucleic Acid ConformationRNA, ViralSequence DeletionVirulence3' Untranslated RegionsRNA, Viral3′ UTRChikungunya virusCHIKVRNA structureSHAPE-MaPviral fitness

Identifiers

PMID38932154
PMCPMC11209300

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.