Evidence map›Paper›PMID 38932149›Full record

ArticleViruses2024

Reconstructing Prehistoric Viral Genomes from Neanderthal Sequencing Data.

Renata C Ferreira, Gustavo V Alves, Marcello Ramon, Fernando Antoneli, Marcelo R S Briones

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Ancient DNA and Human Physiology.Physiology (Bethesda, Md.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Renata C FerreiraCenter for Medical Bioinformatics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP 04039-032, Brazil.
Gustavo V AlvesCenter for Medical Bioinformatics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP 04039-032, Brazil.
Marcello RamonComputique LLC, São Paulo, SP 04545-006, Brazil.
Fernando AntoneliCenter for Medical Bioinformatics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP 04039-032, Brazil.ORCID 0000-0001-9179-4632
Marcelo R S BrionesCenter for Medical Bioinformatics, Escola Paulista de Medicina, Federal University of São Paulo (UNIFESP), São Paulo, SP 04039-032, Brazil.ORCID 0000-0001-8045-2477

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo 20/08943-5National Council for Scientific and Technological Development 311154/2021-2
6 · The paper itself

Abstract

DNA viruses that produce persistent infections have been proposed as potential causes for the extinction of Neanderthals, and, therefore, the identification of viral genome remnants in Neanderthal sequence reads is an initial step to address this hypothesis. Here, as proof of concept, we searched for viral remnants in sequence reads of Neanderthal genome data by mapping to adenovirus, herpesvirus and papillomavirus, which are double-stranded DNA viruses that may establish lifelong latency and can produce persistent infections. The reconstructed ancient viral genomes of adenovirus, herpesvirus and papillomavirus revealed conserved segments, with nucleotide identity to extant viral genomes and variable regions in coding regions with substantial divergence to extant close relatives. Sequence reads mapped to extant viral genomes showed deamination patterns of ancient DNA, and these ancient viral genomes showed divergence consistent with the age of these samples (≈50,000 years) and viral evolutionary rates (10

Indexed as

DNA, AncientGenome, ViralNeanderthalsAnimalsDNA, ViralDNA VirusesEvolution, MolecularFossilsHumansPhylogenySequence Analysis, DNADNA, AncientDNA, Viraladenovirusancient virusesgenome assemblyherpesvirusNeanderthal genomepapillomavirussequence data

Identifiers

PMID38932149
PMCPMC11209150

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.