Evidence map›Paper›PMID 38928581›Full record

ArticleBrain sciences2024

Transcriptomic Profile of Mouse Brain Ageing in Early Developmental Stages.

Karolina Kulis, Kevin Tabury, Mohammed Abderrafi Benotmane, Joanna Polanska

Abstract read
In one paragraph

Article in Brain sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Karolina KulisDepartment of Data Science and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland.ORCID 0009-0006-5029-765X
Kevin TaburyRadiobiology Unit, Institute for Nuclear Medical Application, Belgian Nuclear Research Centre, 2400 Mol, Belgium.ORCID 0000-0002-8004-3718
Mohammed Abderrafi BenotmaneRadiobiology Unit, Institute for Nuclear Medical Application, Belgian Nuclear Research Centre, 2400 Mol, Belgium.
Joanna PolanskaDepartment of Data Science and Engineering, Silesian University of Technology, 44-100 Gliwice, Poland.ORCID 0000-0001-8004-9864

Funding

Belgian Royal Funds Decree 24.06.2021, project ID 21European Union, ENEN2plus project HORIZON-EURATOM-2021-NRT-01-13 101061677The Silesian University of Technology 02/070/BK_24/0052
6 · The paper itself

Abstract

Ageing is a continuous process that can cause neurodevelopmental changes in the body. Several studies have examined its effects, but few have focused on how time affects biological processes in the early stages of brain development. As studying the changes that occur in the early stages of life is important to prevent age-related neurological and psychiatric disorders, we aim to focus on these changes. The transcriptomic markers of ageing that are common to the analysed brain regions of C57Bl/6J mice were identified after conducting two-way ANOVA tests and effect size analysis on the time courses of gene expression profiles in various mouse brain regions. A total of 16,374 genes (59.9%) significantly changed their expression level, among which 7600 (27.8%) demonstrated tissue-dependent differences only, and 1823 (6.7%) displayed time-dependent and tissue-independent responses. Focusing on genes with at least a large effect size gives the list of potential biomarkers 12,332 (45.1%) and 1670 (6.1%) genes, respectively. There were 305 genes that exhibited similar significant time response trends (independently of the brain region). Samples from an 11-day-old mouse embryo validated the identified early-stage brain ageing markers. The overall functional analysis revealed tRNA and rRNA processing in the mitochondrion and contact activation system (CAS), as well as the kallikrein/kinin system (KKS), together with clotting cascade and defective factor F9 activation being affected by ageing. Most ageing-related pathways were significantly enriched, especially those that are strongly connected to development processes and neurodegenerative diseases.

Indexed as

ageingbioinformaticsbrainmus musculusneurodevelopmentpsychiatric disorders

Identifiers

PMID38928581
PMCPMC11201909

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.